Evidence map›Paper›PMID 39383098›Full record

ArticleJournal of experimental botany2025

MRI-Seed-Wizard: combining deep learning algorithms with magnetic resonance imaging enables advanced seed phenotyping.

Iaroslav Plutenko, Volodymyr Radchuk, Simon Mayer, Peter Keil, Stefan Ortleb, Steffen Wagner, Volker Lehmann, Hardy Rolletschek, Ljudmilla Borisjuk

Abstract read
In one paragraph

Article in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Iaroslav PlutenkoLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0002-1064-3531
Volodymyr RadchukLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0002-0472-6605
Simon MayerLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0001-6160-8093
Peter KeilLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.
Stefan OrtlebLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0002-8655-0112
Steffen WagnerLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0001-5979-6013
Volker LehmannBruker BioSpin GmbH, Rudolf-Plank-Str. 23, 76275 Ettlingen, Germany.
Hardy RolletschekLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0002-8619-1391
Ljudmilla BorisjukLeibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland OT Gatersleben, Germany.ORCID 0000-0001-6910-0841

Funding

Deutsche Forschungsgemeinschaft BO1917/7-1, BO1917/5-1 and BO1917/5-2European Regional Development Fund ZS/2019/09/101444
6 · The paper itself

Abstract

Evaluation of relevant seed traits is an essential part of most plant breeding and biotechnology programmes. There is a need for non-destructive, three-dimensional assessment of the morphometry, composition, and internal features of seeds. Here, we introduce a novel tool, MRI-Seed-Wizard, which integrates deep learning algorithms with non-invasive magnetic resonance imaging (MRI) for use in a new domain-plant MRI. The tool enabled in vivo quantification of 23 grain traits, including volumetric parameters of inner seed structure. Several of these features cannot be assessed using conventional techniques, including X-ray computed tomography. MRI-Seed-Wizard was designed to automate the manual processes of identifying, labeling, and analysing digital MRI data. We further provide advanced MRI protocols that allow the evaluation of multiple seeds simultaneously to increase throughput. The versatility of MRI-Seed-Wizard in seed phenotyping is demonstrated for wheat (Triticum aestivum) and barley (Hordeum vulgare) grains, and it is applicable to a wide range of crop seeds. Thus, artificial intelligence, combined with the most versatile imaging modality, MRI, opens up new perspectives in seed phenotyping and crop improvement.

Indexed as

Deep LearningHordeumMagnetic Resonance ImagingPhenotypeSeedsTriticumAlgorithmsAutomatic segmentationdeep learninggrain phenotypingmagnetic resonance imagingmorphometrywheat

Identifiers

PMID39383098
PMCPMC11714760

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.