Evidence map›Paper›PMID 39382199›Full record

ArticleThe journal of physical chemistry. B2024

Does Positron Attachment Take Place in Water Solution?

Mateus Bergami, Jorge Charry, Andres Reyes, Kaline Coutinho, Márcio T do N Varella

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mateus BergamiInstituto de Física, Universidade de São Paulo, Rua do Matão 1371, CEP 05508-090 São Paulo, SP, Brazil.ORCID 0000-0001-9569-4006
Jorge CharryDepartment of Physics and Materials Science, University of Luxembourg, L-1511 Luxembourg City, Luxembourg.ORCID 0000-0003-3069-2522
Andres ReyesDepartment of Chemistry, Universidad Nacional de Colombia, Av. Cra. 30 #45-03, 111321 Bogotá, Colombia.ORCID 0000-0001-7571-2078
Kaline CoutinhoInstituto de Física, Universidade de São Paulo, Rua do Matão 1371, CEP 05508-090 São Paulo, SP, Brazil.ORCID 0000-0002-7586-3324
Márcio T do N VarellaInstituto de Física, Universidade de São Paulo, Rua do Matão 1371, CEP 05508-090 São Paulo, SP, Brazil.ORCID 0000-0002-5812-0342

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed a computational study of positron attachment to hydrated amino acids, namely glycine, alanine, and proline in the zwitterionic form. We combined the sequential quantum mechanics/molecular mechanics (s-QM/MM) method with various levels of any particle molecular orbital (APMO) calculations. Consistent with previous studies, our calculations indicate the formation of energetically stable states for the isolated and microsolvated amino acids, in which the positron localizes around the carboxylate group. However, for the larger clusters, composed of 7 to 40 water molecules, hydrogen bonding between the solute and solvent molecules disfavors positron attachment to the amino acids, giving rise to surface states in which the positron is located around the water-vacuum interface. The analysis of positron binding energies, positronic orbitals, radial probability distributions, and annihilation rates consistently pointed out the change from positron-solute to positron-solvent states. Even with the inclusion of an electrostatic embedding around the aggregates, the positrons did not localize around the solute. Positron attachment to molecules in the gas phase is a well-established fact. The existence of hydrated positronic molecules could also be expected from the analogy with transient anion states, which are believed to participate in radiation damage. Our results indicate that positron attachment to hydrated biomolecules, even to zwitterions with negatively charged carboxylated groups, would not take place. For the larger clusters, in which positron-water interactions are favored, the calculations indicate an unexpectedly large contribution of the core orbitals to the annihilation rates, between 15 and 20%. Finally, we explored correlations between positron binding energies (PBEs) and dipole moments, as well as annihilation rates and PBEs, consistent with previous studies for smaller clusters.

Identifiers

PMID39382199
PMCPMC11492259

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.