Evidence map›Paper›PMID 39379474›Full record

ArticleScientific reports2024

Frequency and spectrum of mutations in human sperm measured using duplex sequencing correlate with trio-based de novo mutation analyses.

Jonatan Axelsson, Danielle LeBlanc, Habiballah Shojaeisaadi, Matthew J Meier, Devon M Fitzgerald, Daniela Nachmanson, Jedidiah Carlson, Alexandra Golubeva, Jake Higgins, Thomas Smith and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Detection of mutations: from Ames test to duplex sequencing.Frontiers in molecular biosciences · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Jonatan AxelssonDepartment of Biology, University of Ottawa, Ottawa, ON, K1N 6N5, Canada. jonatan.axelsson@med.lu.se.ORCID http://orcid.org/0000-0001-7121-2156
Danielle LeBlancEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, Canada.
Habiballah ShojaeisaadiEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, Canada.
Matthew J MeierEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, Canada.
Devon M FitzgeraldTwinStrand Biosciences, Inc., Seattle, WA, USA.
Daniela NachmansonTwinStrand Biosciences, Inc., Seattle, WA, USA.
Jedidiah CarlsonTwinStrand Biosciences, Inc., Seattle, WA, USA.
Alexandra GolubevaTwinStrand Biosciences, Inc., Seattle, WA, USA.
Jake HigginsTwinStrand Biosciences, Inc., Seattle, WA, USA.
Thomas SmithTwinStrand Biosciences, Inc., Seattle, WA, USA.
Fang Yin LoTwinStrand Biosciences, Inc., Seattle, WA, USA.
Richard PilsnerDepartment of Obstetrics & Gynecology, Wayne State University, Detroit, MI, USA.
Andrew WilliamsEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, Canada.
Jesse SalkTwinStrand Biosciences, Inc., Seattle, WA, USA.
Francesco MarchettiEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, Canada.
Carole YaukDepartment of Biology, University of Ottawa, Ottawa, ON, K1N 6N5, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

De novo mutations (DNMs) are drivers of genetic disorders. However, the study of DNMs is hampered by technological limitations preventing accurate quantification of ultra-rare mutations. Duplex Sequencing (DS) theoretically has < 1 error/billion base-pairs (bp). To determine the DS utility to quantify and characterize DNMs, we analyzed DNA from blood and spermatozoa from six healthy, 18-year-old Swedish men using the TwinStrand DS mutagenesis panel (48 kb spanning 20 genic and intergenic loci). The mean single nucleotide variant mutation frequency (MF) was 1.2 × 10

Indexed as

MutationMutation RateSpermatozoaAdolescentDNA Mutational AnalysisHigh-Throughput Nucleotide SequencingHumansMalePolymorphism, Single NucleotideSequence Analysis, DNASwedenDe novo mutationsDuplex sequencingExtrachromosomal circular DNAMutational spectrumMutation frequencySperm DNA mutations

Identifiers

PMID39379474
PMCPMC11461794

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.