Evidence map›Paper›PMID 39379370›Full record

ArticleNature communications2024

Structure of a Rhs effector clade domain provides mechanistic insights into type VI secretion system toxin delivery.

Brooke K Hayes, Marina Harper, Hariprasad Venugopal, Jessica M Lewis, Amy Wright, Han-Chung Lee, Joel R Steele, David L Steer, Ralf B Schittenhelm, John D Boyce and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Brooke K Hayes *Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia.ORCID 0000-0002-6942-785X
Marina Harper *Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia.ORCID 0000-0001-8396-0311
Hariprasad VenugopalRamaciotti Centre for Cryo-Electron Microscopy, Monash University, Clayton, VIC, Australia.
Jessica M LewisBiomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia.ORCID 0000-0002-3200-2751
Amy WrightBiomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia.
Han-Chung LeeMonash Proteomics & Metabolomics Platform, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
Joel R SteeleMonash Proteomics & Metabolomics Platform, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.ORCID 0000-0002-3070-9761
David L SteerMonash Proteomics & Metabolomics Platform, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.ORCID 0000-0001-5656-1569
Ralf B SchittenhelmMonash Proteomics & Metabolomics Platform, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.ORCID 0000-0001-8738-1878
John D BoyceBiomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia. John.Boyce@monash.edu.ORCID 0000-0002-8614-3074
Sheena McGowanBiomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia. Sheena.McGowan@monash.edu.ORCID 0000-0001-6863-1106

Funding

Department of Health | National Health and Medical Research Council (NHMRC) 1128981Department of Health | National Health and Medical Research Council (NHMRC) 1165036
6 · The paper itself

Abstract

The type VI secretion system (T6SS) is a molecular machine utilised by many Gram-negative bacteria to deliver antibacterial toxins into adjacent cells. Here we present the structure of Tse15, a T6SS Rhs effector from the nosocomial pathogen Acinetobacter baumannii. Tse15 forms a triple layered β-cocoon Rhs domain with an N-terminal α-helical clade domain and an unfolded C-terminal toxin domain inside the Rhs cage. Tse15 is cleaved into three domains, through independent auto-cleavage events involving aspartyl protease activity for toxin self-cleavage and a nucleophilic glutamic acid for N-terminal clade cleavage. Proteomic analyses identified that significantly more peptides from the N-terminal clade and toxin domains were secreted than from the Rhs cage, suggesting toxin delivery often occurs without the cage. We propose the clade domain acts as an internal chaperone to mediate toxin tethering to the T6SS machinery. Conservation of the clade domain in other Gram-negative bacteria suggests this may be a common mechanism for delivery.

Indexed as

Acinetobacter baumanniiBacterial ProteinsBacterial ToxinsProtein DomainsType VI Secretion SystemsAmino Acid SequenceCrystallography, X-RayModels, MolecularProteomicsBacterial ProteinsBacterial ToxinsType VI Secretion Systems

Identifiers

PMID39379370
PMCPMC11461821

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.