Evidence map›Paper›PMID 39378345›Full record

ArticleGenetics2024

Evidence for a hydrogen sulfide-sensing E3 ligase in yeast.

Zane Johnson, Yun Wang, Benjamin M Sutter, Benjamin P Tu

Abstract read
In one paragraph

Article in Genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Distinct Stress Regulators in the CRL Family: Emerging Roles of F-Box Proteins: Cullin-RING Ligases and Stress-Sensing.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  2. Mechanisms and rationales of SAM homeostasis.Trends in biochemical sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zane JohnsonDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.
Yun WangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.
Benjamin M SutterDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.
Benjamin P TuDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.ORCID 0000-0001-5545-9183

Funding

UT Southwestern NORCP30DK127984 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Jeff G McDonald · 2022 to 2026
$7.4M
METABOLIC SIGNALS DRIVING CELL GROWTH & PROLIFERATIONR01GM094314 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI TU, BENJAMIN P · 2010 to 2019
$3.2M
Metabolic signals regulating cell growth versus survivalR35GM136370 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Benjamin P Tu · 2020 to 2026
$2.8M
NIDDK NIH HHS P30 DK127984NIGMS NIH HHS R01 GM094314NIGMS NIH HHS R35 GM136370Welch Foundation
6 · The paper itself

Abstract

In yeast, control of sulfur amino acid metabolism relies upon Met4, a transcription factor that activates the expression of a network of enzymes responsible for the biosynthesis of cysteine and methionine. In times of sulfur abundance, the activity of Met4 is repressed via ubiquitination by the SCFMet30 E3 ubiquitin ligase, but the mechanism by which the F-box protein Met30 senses sulfur status to tune its E3 ligase activity remains unresolved. Herein, we show that Met30 responds to flux through the trans-sulfuration pathway to regulate the MET gene transcriptional program. In particular, Met30 is responsive to the biological gas hydrogen sulfide, which is sufficient to induce ubiquitination of Met4 in vivo. Additionally, we identify important cysteine residues in Met30's WD-40 repeat region that sense the availability of sulfur in the cell. Our findings reveal how SCFMet30 dynamically senses the flow of sulfur metabolites through the trans-sulfuration pathway to regulate the synthesis of these special amino acids.

Indexed as

F-Box ProteinsHydrogen SulfideSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinationBasic-Leucine Zipper Transcription FactorsCysteineGene Expression Regulation, FungalTranscription FactorsUbiquitin-Protein Ligase ComplexesUbiquitin-Protein LigasesBasic-Leucine Zipper Transcription FactorsCysteineF-Box ProteinsHydrogen SulfideMET30 protein, S cerevisiaeMET4 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligasesamino acidE3 ubiquitin ligasemetabolismnutrientssensorsulfuryeast

Identifiers

PMID39378345
PMCPMC11538405

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.