Evidence map›Paper›PMID 39377655›Full record

ArticleACS sensors2024

Real-Time Visualization of HIV-1 RNA Detection Using Loop-Mediated Isothermal Amplification-Enabled Particle Diffusometry.

Dong Hoon Lee, Emeka Nwanochie, Katherine N Clayton, Steven T Wereley, Tamara L Kinzer-Ursem, Jacqueline C Linnes

Abstract read
In one paragraph

Article in ACS sensors, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dong Hoon LeeSchool of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0002-8657-1909
Emeka NwanochieWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Katherine N ClaytonOmniVis Inc., South San Francisco, California 94080, United States.
Steven T WereleySchool of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Tamara L Kinzer-UrsemWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0001-7343-115X
Jacqueline C LinnesWeldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0003-4962-0908

Funding

Pont-of-use Acute HIV Infection Diagnostic for Substance Using PopulationsDP2DA051910 · NIDA · PURDUE UNIVERSITY · PI LINNES, JACQUELINE · 2020 to 2023
$2.6M
Smartphone-based diagnostic for HIV self-testingR33AI140474 · NIAID · PURDUE UNIVERSITY · PI LINNES, JACQUELINE · 2021 to 2022
$1.4M
Smartphone-based diagnostic for HIV self-testingR61AI140474 · NIAID · PURDUE UNIVERSITY · PI LINNES, JACQUELINE · 2018 to 2020
$1.1M
NIAID NIH HHS R33 AI140474NIAID NIH HHS R61 AI140474NIDA NIH HHS DP2 DA051910
6 · The paper itself

Abstract

Isothermal nucleic acid amplification tests, NAATs, such as reverse transcription-loop-mediated isothermal amplification (RT-LAMP), offer promising capabilities to perform real-time semiquantitative detection of viral pathogens. These tests provide rapid results, utilize simple instrumentation for single-temperature reactions, support efficient user workflows, and are suitable for field use. Herein, we present a novel and robust method for real-time monitoring of HIV-1 RNA RT-LAMP utilizing a novel implementation of particle diffusometry (PD), a diffusivity quantification technique using fluorescent particles, to quantify viral concentration in nuclease-free water. We monitor changes in particle diffusion dynamics of 400 nm fluorescently labeled particles throughout the RT-LAMP of HIV-1 RNA in nuclease-free water, enabling measurement within 20 min and detection of concentrations as low as 25 virus particles per μL. Moreover, in a single-blind study, we demonstrate semiquantitative detection by accurately determining the initial concentration of an unknown HIV-1 RNA within a 10% absolute error margin. These results highlight the potential of real-time PD readout for quantifying HIV-1 RNA via RT-LAMP, offering promise for viral load monitoring of HIV and other chronic infections.

Indexed as

HIV-1Nucleic Acid Amplification TechniquesRNA, ViralDiffusionHumansMolecular Diagnostic TechniquesRNA, Viraldiagnosticsdiffusion coefficientfluorescenceisothermal amplificationparticle diffusometryreal timeRT-LAMP

Identifiers

PMID39377655
PMCPMC12056894

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.