Evidence map›Paper›PMID 39377268›Full record

ArticleJournal of experimental botany2025

The MADS-box gene XAANTAL1 participates in Arabidopsis thaliana primary root growth and columella stem cell patterns in response to ROS, via direct regulation of PEROXIDASE 28 and RETINOBLASTOMA-RELATED genes.

Estephania Zluhan-Martínez, Claudio A Castañón-Suárez, Mario A Gutiérrez-Rodríguez, Fernando Lledías, Tao Zhang, Jesús T Peng, Jazz Dickinson, Diana Belén Sánchez Rodríguez, María de la Paz Sánchez, Berenice García-Ponce and 2 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Estephania Zluhan-MartínezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0002-6932-6450
Claudio A Castañón-SuárezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0003-3323-173X
Mario A Gutiérrez-RodríguezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.
Fernando LledíasDepartamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, CP 62210, México.ORCID 0000-0002-2141-8727
Tao ZhangCell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-3024-9128
Jesús T PengCell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA.
Jazz DickinsonCell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-7840-5636
Diana Belén Sánchez RodríguezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.
María de la Paz SánchezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0003-4153-5119
Berenice García-PonceLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0002-7312-0754
Elena R Álvarez-BuyllaLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0002-7938-6473
Adriana Garay-ArroyoLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, CP 04510, México.ORCID 0000-0003-1575-6284

Funding

Illuminating the chemical biology of stem cell decisions in plant rootsR35GM147216 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Alexandra Jazz Dickinson · 2022 to 2026
$2.0M
Consejo Nacional de Ciencia y Tecnología, MéxicoMaster in Science scholarship from CONACYT CVU:1190893NIGMS NIH HHS R35 GM147216Programa de Doctorado en Ciencias Biomédicas, Universidad Nacional Autónoma de MéxicoUNAM-DGAPA-PAPIIT IN200920
6 · The paper itself

Abstract

The balance between cell growth, proliferation, and differentiation emerges from gene regulatory networks coupled to various signal transduction pathways, including reactive oxygen species (ROS) and transcription factors (TFs), enabling developmental responses to environmental cues. The primary root of Arabidopsis thaliana has become a valuable system for unravelling such networks. Recently, the role of TFs that mediate ROS inhibition of primary root growth has begun to be characterized. This study demonstrates that the MADS-box TF gene XAANTAL1 (XAL1) is an essential regulator of hydrogen peroxide (H2O2) in primary root growth and root stem cell niche identity. Interestingly, our findings indicated that XAL1 acts as a positive regulator of H2O2 concentration in the root meristem by directly regulating genes involved in oxidative stress response, such as PEROXIDASE 28 (PER28). Moreover, we found that XAL1 is necessary for the H2O2-induced inhibition of primary root growth through the negative regulation of peroxidase and catalase activities. Furthermore, XAL1, in conjunction with RETINOBLASTOMA-RELATED (RBR), is essential for positively regulating the differentiation of columella stem cells and for participating in primary root growth inhibition in response to oxidative stress induced by H2O2 treatment.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHydrogen PeroxidePlant RootsReactive Oxygen SpeciesMADS Domain ProteinsPeroxidasesStem CellsArabidopsis ProteinsHydrogen PeroxideMADS Domain ProteinsPeroxidasesRBR1 protein, ArabidopsisReactive Oxygen SpeciesArabidopsis thalianahydrogen peroxideMADS-boxoxidative stressPER28RBRroot developmentROSXAL1/AGL12

Identifiers

PMID39377268
PMCPMC11714753

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.