Evidence map›Paper›PMID 39375363›Full record

ArticleNPJ biofilms and microbiomes2024

Secreted nucleases reclaim extracellular DNA during biofilm development.

Stephen M Lander, Garth Fisher, Blake A Everett, Peter Tran, Arthur Prindle

Erratum issuedAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. The role of extracellular DNA inJournal of bacteriology · 2026
    Review
  2. Article
  3. Article
  4. Transcriptional and cellular reprogramming inCurrent research in microbial sciences · 2026
    Article
  5. Review
  6. Review
  7. Review
  8. Towards EffectiveInternational journal of molecular sciences · 2025
    Review
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Stephen M Lander *Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Chicago, 60611, IL, USA.
Garth Fisher *Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Chicago, 60611, IL, USA.
Blake A EverettDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Chicago, 60611, IL, USA.
Peter TranCenter for Synthetic Biology, Northwestern University, Evanston, 60208, IL, USA.
Arthur PrindleDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Chicago, 60611, IL, USA. arthur.prindle@northwestern.edu.

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Devalingam Mahalingam · 1993 to 2026
$153.9M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Emergent metabolic coordination and cell-to-cell signaling in bacterial biofilms-ADMIN SUPP for EquipmentR35GM147170 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Arthur Prindle · 2022 to 2026
$2.1M
Acquisition of a Thermo Fisher Scientific Q Exactive UHMR mass spectrometerS10OD025194 · OD · NORTHWESTERN UNIVERSITY · PI COMPTON, PHILIP DANIEL · 2018 to 2018
$795k
Elucidating mechanisms of acetylcholine signaling in bacterial biofilmsF31GM143907 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LANDER, STEPHEN · 2022 to 2024
$131k
National Science Foundation (NSF) NSF 2239567NCI NIH HHS P30 CA060553NIGMS NIH HHS F31 GM143907NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R35 GM147170NIH HHS S10 OD025194United States Department of Defense | United States Army | U.S. Army Research, Development and Engineering Command | Army Research Office (ARO) W911NF-21-1-0291U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R35GM147170-01U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) F31GM143907
6 · The paper itself

Abstract

DNA is the genetic code found inside all living cells and its molecular stability can also be utilized outside the cell. While extracellular DNA (eDNA) has been identified as a structural polymer in bacterial biofilms, whether it persists stably throughout development remains unclear. Here, we report that eDNA is temporarily invested in the biofilm matrix before being reclaimed later in development. Specifically, by imaging eDNA dynamics within undomesticated Bacillus subtilis biofilms, we found eDNA is produced during biofilm establishment before being globally degraded in a spatiotemporally coordinated pulse. We identified YhcR, a secreted Ca

Indexed as

Bacillus subtilisBiofilmsDNA, BacterialBacterial ProteinsDeoxyribonucleasesBacterial ProteinsDeoxyribonucleasesDNA, Bacterial

Identifiers

PMID39375363
PMCPMC11458576

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.