Evidence map›Paper›PMID 39375018›Full record

ArticleThe ISME journal2024

Temporal enrichment of comammox Nitrospira and Ca. Nitrosocosmicus in a coastal plastisphere.

Qian Yang, Yin Zhong, Shi-Wei Feng, Ping Wen, Heli Wang, Junhong Wu, Sen Yang, Jie-Liang Liang, Dan Li, Qiong Yang and 2 more

Abstract read
In one paragraph

Article in The ISME journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Qian YangState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.
Yin ZhongState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.
Shi-Wei FengInstitute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, No. 55, Zhongshan Dadao Xi Road, Tianhe District, Guangzhou 510631, P. R. China.
Ping WenInstitute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, No. 55, Zhongshan Dadao Xi Road, Tianhe District, Guangzhou 510631, P. R. China.
Heli WangState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.
Junhong WuState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.
Sen YangState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.
Jie-Liang LiangInstitute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, No. 55, Zhongshan Dadao Xi Road, Tianhe District, Guangzhou 510631, P. R. China.
Dan LiSchool of Environment and Civil Engineering, Dongguan University of Technology, No. 1, Daxue Road, Songshanhu District, Dongguan 523808, P. R. China.
Qiong YangGuangdong Neilingding Futian National Nature Reserve, No. 1, Mangrove Road, Futian District, Shenzhen 518040, P. R. China.
Nora F Y TamSchool of Science and Technology, Hong Kong Metropolitan University, 30 Good Shepherd Street, Ho Man Tin, Kowloon, Hong Kong 999077, P. R. China.
Ping'an PengState Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Maco Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, No. 511, Kehua Street, Tianhe District, Guangzhou 510640, P. R. China.

Funding

Guangdong Foundation for Program of Science and Technology Research 2023B1212060049Guangdong Major Project of Basic and Applied Basic Research 2023B0303000007Key Research and Development Program of Hainan Province ZDYF2023SHFZ171National Natural Science Foundation of China 42 077 285Science and Technology Projects of Guangzhou 2024A04J6534State Key Laboratory of Organic Geochemistry SKLOG2024-01
6 · The paper itself

Abstract

Plastic marine debris is known to harbor a unique microbiome (termed the "plastisphere") that can be important in marine biogeochemical cycles. However, the temporal dynamics in the plastisphere and their implications for marine biogeochemistry remain poorly understood. Here, we characterized the temporal dynamics of nitrifying communities in the plastisphere of plastic ropes exposed to a mangrove intertidal zone. The 39-month colonization experiment revealed that the relative abundances of Nitrospira and Candidatus Nitrosocosmicus representatives increased over time according to 16S rRNA gene amplicon sequencing analysis. The relative abundances of amoA genes in metagenomes implied that comammox Nitrospira were the dominant ammonia oxidizers in the plastisphere, and their dominance increased over time. The relative abundances of two metagenome-assembled genomes of comammox Nitrospira also increased with time and positively correlated with extracellular polymeric substances content of the plastisphere but negatively correlated with NH4+ concentration in seawater, indicating the long-term succession of these two parameters significantly influenced the ammonia-oxidizing community in the coastal plastisphere. At the end of the colonization experiment, the plastisphere exhibited high nitrification activity, leading to the release of N2O (2.52 ng N2O N g-1) in a 3-day nitrification experiment. The predicted relative contribution of comammox Nitrospira to N2O production (17.9%) was higher than that of ammonia-oxidizing bacteria (4.8%) but lower than that of ammonia-oxidizing archaea (21.4%). These results provide evidence that from a long-term perspective, some coastal plastispheres will become dominated by comammox Nitrospira and thereby act as hotspots of ammonia oxidation and N2O production.

Indexed as

AmmoniaNitrificationRNA, Ribosomal, 16SSeawaterArchaeaBacteriaMetagenomeMicrobiotaOxidation-ReductionPhylogenyAmmoniaRNA, Ribosomal, 16Scoastal plastisphereComammox nitrospiramangroveN2Onitrogen cycling

Identifiers

PMID39375018
PMCPMC11471898

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.