Evidence map›Paper›PMID 39374819›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2024

Unveiling ancestral threads: Exploring CCR5 ∆32 mutation frequencies in Colombian populations for HIV/AIDS therapeutics.

Alejandro Barrios-Navas, Thanh Long Nguyen, Juan Esteban Gallo, Leonardo Mariño-Ramírez, José María Satizabal Soto, Adalberto Sánchez, I King Jordan, Augusto Valderrama-Aguirre

Abstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alejandro Barrios-NavasGrupo Instituto de Investigaciones Biomédicas, Departamento de Ciencias Biológicas, Facultad de Ciencias, Universidad de Los Andes, Bogotá, DC, Colombia.
Thanh Long NguyenSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Juan Esteban GalloNational Institute on Minority Health and Health Disparities, National Institutes of Health, Rockville, MD, USA.
Leonardo Mariño-RamírezNational Institute on Minority Health and Health Disparities, National Institutes of Health, Rockville, MD, USA.
José María Satizabal SotoUniversidad del Valle, Faculty of Health, School of Basic Sciences, Cali, Valle del Cauca, Colombia.
Adalberto SánchezUniversidad del Valle, Faculty of Health, School of Basic Sciences, Cali, Valle del Cauca, Colombia.
I King JordanSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Augusto Valderrama-AguirreGrupo Instituto de Investigaciones Biomédicas, Departamento de Ciencias Biológicas, Facultad de Ciencias, Universidad de Los Andes, Bogotá, DC, Colombia. Electronic address: a.valderramaa@uniandes.edu.co.

Funding

Genomics and Biobank Research for Health EquityZIAMD000018 · NIMHD · NATIONAL INSTITUTE ON MINORITY HEALTH AND HEALTH DISPARITIES · PI MARIÑO-RAMÍREZ, LEONARDO · 2020 to 2025
$2.7M
Epidemiology and Genomics of Health DisparitiesZIAMD000016 · NIMHD · NATIONAL INSTITUTE ON MINORITY HEALTH AND HEALTH DISPARITIES · PI MARINO-RAMIREZ, LEONARDO · 2019 to 2021
$1.6M
Intramural NIH HHS ZIA MD000016Intramural NIH HHS ZIA MD000018
6 · The paper itself

Abstract

AIDS remains a significant global health challenge since its emergence in 1981, with millions of deaths and new cases every year. The CCR5 ∆32 genetic deletion confers immunity to HIV infection by altering a cell membrane protein crucial for viral entry. Stem cell transplants from homozygous carriers of this mutation to HIV-infected individuals have resulted in viral load reduction and disease remission, suggesting a potential therapeutic avenue. This study aims to investigate the relationship between genetic ancestry and the frequency of the CCR5 ∆32 mutation in Colombian populations, exploring the feasibility of targeted donor searches based on ancestry composition. Utilizing genomic data from the CÓDIGO-Colombia consortium, comprising 532 individuals, the study assessed the presence of the CCR5 ∆32 mutation and examined if the population was on Hardy-Weinberg equilibrium. Individuals were stratified into clusters based on African, American, and European ancestry percentages, with logistic regression analysis performed to evaluate the association between ancestry and mutation frequency. Additionally, global genomic databases were utilized to visualize the worldwide distribution of the mutation. The findings revealed a significant positive association between European ancestry and the CCR5 ∆32 mutation frequency, underscoring its relevance in donor selection. African and American ancestry showed negative but non-significant associations with CCR5 ∆32 frequency, which may be attributed to the study's limitations. These results emphasize the potential importance of considering ancestry in donor selection strategies, reveal the scarcity of potential donors in Colombia, and underscore the need to consider donors from other populations with mainly European ancestry if the CCR5 ∆32 stem cell transplant becomes a routine treatment for HIV/AIDS in Colombia.

Indexed as

HIV InfectionsReceptors, CCR5Acquired Immunodeficiency SyndromeColombiaFemaleGene FrequencyHumansMaleMutationMutation RateCCR5 protein, humanReceptors, CCR5AIDSAncestryCCR5Delta 32HIVStem cell

Identifiers

PMID39374819
PMCPMC11563905

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.