Evidence map›Paper›PMID 39373803›Full record

ArticleJournal of plant research2024

Expression of laccase and ascorbate oxidase affects lignin composition in Arabidopsis thaliana stems.

Konan Ishida, Senri Yamamoto, Takashi Makino, Yuki Tobimatsu

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of plant research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. The laccase geneFrontiers in plant science · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Konan IshidaDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QE, UK. ki272@cam.ac.uk.ORCID http://orcid.org/0000-0003-4475-4886
Senri YamamotoResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, 611-0011, Japan.ORCID http://orcid.org/0009-0005-1134-740X
Takashi MakinoGraduate School of Life Sciences, Tohoku University, Sendai, 980-8578, Japan.
Yuki TobimatsuResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, 611-0011, Japan.ORCID http://orcid.org/0000-0002-7578-7392

Funding

Japan Society for the Promotion of Science 22J13457Japan Society for the Promotion of Science JP20H03044Masayoshi Son Foundation Masayoshi Son Foundation
6 · The paper itself

Abstract

Lignin is a phenolic polymer that is a major source of biomass. Oxidative enzymes, such as laccase and peroxidase, are required for lignin polymerisation. Laccase is a member of the multicopper oxidase family and has a high amino acid sequence similarity with ascorbate oxidase. However, the process of functional differentiation between the two enzymes remains poorly understood. In this study, the common ancestry sequence of laccase and ascorbate oxidase (AncMCO) was predicted via phylogenetic reconstruction, and its in vivo effect on lignin biosynthesis in Arabidopsis thaliana was assessed. The estimated AncMCO sequence conserved key residues that coordinate with copper ions, implying that the electron transfer system is likely to be conserved in AncMCO. However, multiple insertions/deletions corresponding to protein surface structures have been found between laccase, ascorbate oxidase, and AncMCO. The overexpression of canonical laccase (AtLAC4) and ascorbate oxidase (AtAAO1) in A. thaliana resulted in notable increases of syringyl/guaiacyl lignin unit ratio in stems, whereas, in contrast, the overexpression of AncMCO did not show any detectable change in lignin deposition. Transcriptomic analysis revealed that the AtAAO1-overexpressing line exhibited significant changes in the expression of a wide range of cell wall biosynthesis genes. These results highlight the importance of the molecular evolution of multicopper oxidase, which drives lignin biosynthesis during plant evolution.

Indexed as

ArabidopsisAscorbate OxidaseLaccaseLigninPlant StemsArabidopsis ProteinsCell WallGene Expression Regulation, PlantPhylogenyArabidopsis ProteinsAscorbate OxidaseLaccaseLigninAscorbate oxidaseLaccaseLigninMolecular evolutionMulticopper oxidasePlant cell wall

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.