Evidence map›Paper›PMID 39373581›Full record

ArticleThe Biochemical journal2024

Histone deacetylase 7 activates 6-phosphogluconate dehydrogenase via an enzyme-independent mechanism that involves the N-terminal protein-protein interaction domain.

Yizhuo Wang, James E B Curson, Divya Ramnath, Kaustav Das Gupta, Robert C Reid, Denuja Karunakaran, David P Fairlie, Matthew J Sweet

Abstract read
In one paragraph

Article in The Biochemical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yizhuo WangInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
James E B CursonInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
Divya RamnathInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
Kaustav Das GuptaInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
Robert C ReidInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
Denuja KarunakaranInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
David P FairlieInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.
Matthew J SweetInstitute for Molecular Bioscience (IMB), The University of Queensland, Brisbane, Queensland 4072, Australia.ORCID 0000-0002-0406-8139

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone deacetylase 7 (HDAC7) is a member of the class IIa family of classical HDACs with important roles in cell development, differentiation, and activation, including in macrophages and other innate immune cells. HDAC7 and other class IIa HDACs act as transcriptional repressors in the nucleus but, in some cell types, they can also act in the cytoplasm to modify non-nuclear proteins and/or scaffold signalling complexes. In macrophages, HDAC7 is a cytoplasmic protein with both pro- and anti-inflammatory functions, with the latter activity involving activation of the pentose phosphate pathway (PPP) enzyme 6-phosphogluconate dehydrogenase (6PGD) and the generation of anti-inflammatory metabolite ribulose-5-phosphate. Here, we used ectopic expression systems and biochemical approaches to investigate the mechanism by which HDAC7 promotes 6PGD enzyme activity. We reveal that HDAC7 enzyme activity is not required for its activation of 6PGD and that the N-terminal protein-protein interaction domain of HDAC7 is sufficient to initiate this response. Mechanistically, the N-terminus of HDAC7 increases the affinity of 6PGD for NADP+, promotes the generation of a shorter form of 6PGD, and enhances the formation of higher order protein complexes, implicating its scaffolding function in engagement of the PPP. This contrasts with the pro-inflammatory function of HDAC7 in macrophages, in which it promotes deacetylation of the glycolytic enzyme pyruvate kinase M2 for inflammatory cytokine production.

Indexed as

Histone DeacetylasesPhosphogluconate DehydrogenaseAnimalsHEK293 CellsHumansMacrophagesMiceNADPPentose Phosphate PathwayProtein Interaction Domains and MotifsHDAC7 protein, humanHistone DeacetylasesNADPPhosphogluconate Dehydrogenase6-phosphogluconate dehydrogenaseHDACshistone deacetylase 7inflammationlysine deacetylasescaffolding

Identifiers

PMID39373581
PMCPMC11555707

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.