Evidence map›Paper›PMID 39371270›Full record

ArticleFrontiers in transplantation2024

Antibiotic subclasses differentially perturb the gut microbiota in kidney transplant recipients.

Hanbo Dong, Runzhe Li, Ni Zhao, Darshana M Dadhania, Manikkam Suthanthiran, John R Lee, Wodan Ling

Abstract read
In one paragraph

Article in Frontiers in transplantation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hanbo Dong *Division of Biostatistics, Department of Population Health Sciences, Weill Cornell Medicine, New York, NY, United States.
Runzhe Li *Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.
Ni ZhaoDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.
Darshana M DadhaniaDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY, United States.
Manikkam SuthanthiranDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY, United States.
John R LeeDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY, United States.
Wodan LingDivision of Biostatistics, Department of Population Health Sciences, Weill Cornell Medicine, New York, NY, United States.

Funding

Statistical methods for analyzing messy microbiome data: detection of hidden artifacts and robust modeling approachesR01GM147162 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Ni Zhao · 2022 to 2026
$1.8M
Statistical Methods for Large Scale Microbiome Studies of Cardiovascular Disease RiskR01HL155417 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI WU, MICHAEL CHIAO-AN · 2021 to 2024
$1.8M
Statistical Methods for Enhanced Mapping of Microbiome RelationshipsR01GM151301 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI MICHAEL Chiao-An WU · 2023 to 2026
$1.2M
Robust Statistical Methods for Longitudinal Microbiome StudiesR01GM155734 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Wodan Ling · 2024 to 2026
$1.2M
Gut Microbiome, Acute Rejection, and Tacrolimus Dosing in Kidney TransplantationK23AI124464 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEE, JOHN RICHARD · 2016 to 2020
$944k
NHLBI NIH HHS R01 HL155417NIAID NIH HHS K23 AI124464NIGMS NIH HHS R01 GM147162NIGMS NIH HHS R01 GM151301NIGMS NIH HHS R01 GM155734
6 · The paper itself

Abstract

Introduction: The impact of antibiotics on the gut microbiota in kidney transplant recipients is not well characterized. In this study, we determine the impact of different subclasses of antibiotics on the gut microbiota in a cohort of 168 kidney transplant recipients. Methods: Gut microbiome profiling was performed on 510 fecal specimens using 16S rRNA gene sequencing of the V4-V5 hypervariable region. We classified fecal specimens by antibiotic exposure into 5 categories: Beta-lactam, Fluoroquinolone (FQ), Beta-lactam & FQ Group, Other Antibiotics, and No Antibiotic (No Abx). Mixed-effects regression models were utilized to identify changes in microbial diversity and in the centered log-ratio (CLR) transformed abundance of genera while adjusting for important covariates. Results: Antibiotic administration was associated with a significant decrease in the Shannon alpha diversity index, a decreased abundance of 11 taxa including Conclusions: Beta-lactam antibiotics and FQ antibiotics have a profound impact on the gut microbiota in kidney transplant recipients. Given the link of the gut microbiota to infectious complications, antibiotic associated changes in the microbiota may lead to an increased risk for further infections.

Indexed as

antibiotic subclassesdifferentially abundant bacteriagut microbiotakidney transplantationmicrobial diversity

Identifiers

PMID39371270
PMCPMC11451434

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.