Evidence map›Paper›PMID 39369109›Full record

ArticleCommunications biology2024

Importance of copy number variants in childhood apraxia of speech and other speech sound disorders.

E Ricky Chan, Penelope Benchek, Gabrielle Miller, Kim Brustoski, Ashleigh Schaffer, Barbara Truitt, Jessica Tag, Lisa Freebairn, Barbara A Lewis, Catherine M Stein and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

E Ricky ChanDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.ORCID 0000-0001-9277-5329
Penelope BenchekDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Gabrielle MillerDepartment of Psychological Sciences, Case Western Reserve University, Cleveland, OH, USA.
Kim BrustoskiDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Ashleigh SchafferDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA.
Barbara TruittDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Jessica TagDepartment of Psychological Sciences, Case Western Reserve University, Cleveland, OH, USA.
Lisa FreebairnDepartment of Psychological Sciences, Case Western Reserve University, Cleveland, OH, USA.
Barbara A LewisDepartment of Psychological Sciences, Case Western Reserve University, Cleveland, OH, USA.
Catherine M SteinDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA. cmj7@case.edu.ORCID 0000-0002-9763-5023
Sudha K IyengarDepartment of Population & Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA. ski@case.edu.ORCID 0000-0001-7488-250X

Funding

FAMILIAL STUDY OF SEVERE PHONOLOGY DISORDERSR01DC000528 · NIDCD · CASE WESTERN RESERVE UNIVERSITY · PI LEWIS, BARBARA A · 1995 to 2018
$9.5M
Genetic causes of developmental speech sound disorder in familiesR01DC012380 · NIDCD · CASE WESTERN RESERVE UNIVERSITY · PI IYENGAR, SUDHA K · 2012 to 2016
$3.2M
Disease Mechanisms of Pontocerebellar Hypoplasia Type 10R01NS123524 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI SCHAFFER, ASHLEIGH E · 2021 to 2025
$2.6M
NIDCD NIH HHS R01 DC000528NIDCD NIH HHS R01 DC012380NINDS NIH HHS R01 NS123524
6 · The paper itself

Abstract

Childhood apraxia of speech (CAS) is a severe and rare form of speech sound disorder (SSD). CAS is typically sporadic, but may segregate in families with broader speech and language deficits. We hypothesize that genetic changes may be involved in the etiology of CAS. We conduct whole-genome sequencing in 27 families with CAS, 101 individuals in all. We identify 17 genomic regions including 19 unique copy number variants (CNVs). Three variants are shared across families, but the rest are unique; three events are de novo. In four families, siblings with milder phenotypes co-inherited the same CNVs, demonstrating variable expressivity. We independently validate eight CNVs using microarray technology and find many of these CNVs are present in children with milder forms of SSD. Bioinformatic investigation reveal four CNVs with substantial functional consequences (cytobands 2q24.3, 6p12.3-6p12.2, 11q23.2-11q23.3, and 16p11.2). These discoveries show that CNVs are a heterogeneous, but prevalent, cause of CAS.

Indexed as

ApraxiasDNA Copy Number VariationsSpeech Sound DisorderAdolescentChildChild, PreschoolFemaleGenetic Predisposition to DiseaseHumansMalePedigreePhenotypeWhole Genome Sequencing

Identifiers

PMID39369109
PMCPMC11455877

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.