Evidence map›Paper›PMID 39367758›Full record

ArticleThe Journal of infectious diseases2025

High Frequency of Artemisinin Partial Resistance Mutations in the Great Lakes Region Revealed Through Rapid Pooled Deep Sequencing.

Neeva Wernsman Young, Pierre Gashema, David Giesbrecht, Tharcisse Munyaneza, Felicien Maisha, Fred Mwebembezi, Rule Budodo, Alec Leonetti, Rebecca Crudale, Vincent Iradukunda and 15 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  8. Public Health Perspectives on IntegratingTropical medicine and infectious disease · 2026
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  18. Mapping Plasmodium falciparum mutations in Africa: A critical review of emerging drug resistance and implications for malaria control.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2025
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Neeva Wernsman YoungPathology and Laboratory Medicine, Brown University, Providence, Rhode Island.ORCID 0000-0002-0131-7670
Pierre GashemaCenter for Genomic Biology, Institut d'Enseignement Supérieur de Ruhengeri, Ruhengeri, Rwanda.ORCID 0000-0001-9348-0936
David GiesbrechtPathology and Laboratory Medicine, Brown University, Providence, Rhode Island.ORCID 0000-0003-2498-4705
Tharcisse MunyanezaNational Reference Laboratory, Rwanda Biomedical Center, Kigali.
Felicien MaishaDepartment of Pediatrics, HEAL Africa Hospital, Goma, Democratic Republic of the Congo.
Fred MwebembeziDepartment of Community Health, Mbarara University of Science and Technology, Uganda.
Rule BudodoNational Institute for Medical Research, Dar es Salaam, Tanzania.ORCID 0000-0003-0297-9219
Alec LeonettiPathology and Laboratory Medicine, Brown University, Providence, Rhode Island.
Rebecca CrudalePathology and Laboratory Medicine, Brown University, Providence, Rhode Island.ORCID 0000-0002-0789-4196
Vincent IradukundaCenter for Genomic Biology, Institut d'Enseignement Supérieur de Ruhengeri, Ruhengeri, Rwanda.
Ntwari Jean BoscoCenter for Genomic Biology, Institut d'Enseignement Supérieur de Ruhengeri, Ruhengeri, Rwanda.
Rebecca I KirbyPathology and Laboratory Medicine, Brown University, Providence, Rhode Island.ORCID 0009-0007-6876-5279
Ross M BoyceInstitute for Global Health and Infectious Diseases, University of North Carolina, Chapel Hill.ORCID 0000-0002-9489-6324
Celine I MandaraNational Institute for Medical Research, Dar es Salaam, Tanzania.
Grace K KanyankoleNational Institute for Medical Research, Dar es Salaam, Tanzania.ORCID 0009-0004-1864-280X
Moses NtaroDepartment of Community Health, Mbarara University of Science and Technology, Uganda.
Lucy C OkellMRC Centre for Global Infectious Disease Analysis, Faculty of Medicine, Imperial College London, United Kingdom.
Oliver J WatsonMRC Centre for Global Infectious Disease Analysis, Faculty of Medicine, Imperial College London, United Kingdom.ORCID 0000-0003-2374-0741
Edgar MulogoDepartment of Community Health, Mbarara University of Science and Technology, Uganda.
Deus S IshengomaNational Institute for Medical Research, Dar es Salaam, Tanzania.ORCID 0000-0003-2040-3416
Stan HangiDepartment of Pediatrics, HEAL Africa Hospital, Goma, Democratic Republic of the Congo.
Corine KaremaQuality Equity Health Care, Kigali, Rwanda.ORCID 0000-0002-6099-7768
Jean-Baptiste MazaratiCenter for Genomic Biology, Institut d'Enseignement Supérieur de Ruhengeri, Ruhengeri, Rwanda.
Jonathan J JulianoInstitute for Global Health and Infectious Diseases, University of North Carolina, Chapel Hill.ORCID 0000-0002-0591-0850
Jeffrey A BaileyPathology and Laboratory Medicine, Brown University, Providence, Rhode Island.

Funding

Artemisinin Resistance in Africa: its emergence and evolution in RwandaR01AI156267 · NIAID · BROWN UNIVERSITY · PI BAILEY, JEFFREY A., JULIANO, JONATHAN J · 2021 to 2024
$3.0M
Mentoring in Translational Malaria GenomicsK24AI134990 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jonathan J Juliano · 2018 to 2026
$1.6M
National Institute of Allergy and Infectious Diseases R01AI156267NIAID NIH HHS K24 AI134990NIAID NIH HHS R01 AI156267
6 · The paper itself

Abstract

backgroundIn Africa, the first Plasmodium falciparum artemisinin partial resistance mutation was Kelch13 (K13) 561H, detected and validated at appreciable frequency in Rwanda in 2014. Surveillance to better define the extent of the emergence in Rwanda and neighboring countries is critical.

methodsWe used novel liquid blood drop preservation with pooled sequencing to provide cost-effective rapid assessment of resistance mutation frequencies at multiple collection sites across Rwanda and neighboring regions in Uganda, Tanzania, and the Democratic Republic of the Congo. Malaria-positive samples (N = 5465) from 39 health facilities collected between May 2022 and March 2023 were sequenced in 199 pools.

resultsIn Rwanda, K13 561H and 675V were detected in 90% and 65% of sites, with an average frequency of 19.0% (range, 0%-54.5%) and 5.0% (0%-35.5%), respectively. In Tanzania, 561H had high frequency in multiple sites. 561H appeared at 1.6% in Uganda. 561H was absent from the Democratic Republic of the Congo, although 675V was seen at low frequency. Concerningly, candidate mutations were observed: 441L, 449A, and 469F co-occurred with validated mutations, suggesting that they are arising under the same pressures. Other markers for decreased susceptibility to artemether-lumefantrine are common: P falciparum multidrug resistance protein 1 N86 at 98.0% (range, 63.3%-100%) and 184F at 47.0% (0%-94.3%) and P falciparum chloroquine resistance transporter 76T at 14.7% (0%-58.6%). Additionally, sulfadoxine-pyrimethamine-associated mutations show high frequencies.

conclusionsK13 mutations are rapidly expanding in the region, further endangering control efforts with the potential of engendering partner drug resistance.

Indexed as

AntimalarialsArtemisininsDrug ResistanceMalaria, FalciparumMutationPlasmodium falciparumDemocratic Republic of the CongoHigh-Throughput Nucleotide SequencingHumansProtozoan ProteinsRwandaTanzaniaUgandaAntimalarialsartemisininArtemisininsProtozoan Proteinsartemisinindrug resistanceEast Africakelch13malaria

Identifiers

PMID39367758
PMCPMC11793061

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.