Evidence map›Paper›PMID 39367146›Full record

ArticleScientific reports2024

Pan-cancer analysis of the prognostic and immunological roles of SHP-1/ptpn6.

Ping Cui, Jie Lian, Yang Liu, Dongsheng Zhang, Yao Lin, Lili Lu, Li Ye, Hui Chen, Sanqi An, Jiegang Huang and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mechanistic Insights into Tumorigenesis from Serum Proteins.medRxiv : the preprint server for health sciences · 2025
    Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ping Cui *Life Science Institute, Guangxi Medical University, Nanning, China.
Jie Lian *Life Science Institute, Guangxi Medical University, Nanning, China.
Yang LiuGuangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, 22, Shuangyong Road, Nanning, 530021, China.
Dongsheng ZhangLife Science Institute, Guangxi Medical University, Nanning, China.
Yao LinLife Science Institute, Guangxi Medical University, Nanning, China.
Lili LuLife Science Institute, Guangxi Medical University, Nanning, China.
Li YeLife Science Institute, Guangxi Medical University, Nanning, China.
Hui ChenGuangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, 22, Shuangyong Road, Nanning, 530021, China.
Sanqi AnLife Science Institute, Guangxi Medical University, Nanning, China. ansq@mail2.sysu.edu.cn.
Jiegang HuangGuangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, 22, Shuangyong Road, Nanning, 530021, China. jieganghuang@gxmu.edu.cn.
Hao LiangLife Science Institute, Guangxi Medical University, Nanning, China. lianghao@gxmu.edu.cn.

Funding

2022 Innovation and Entrepreneurship Training Program of Guangxi Medical University 202210598034National Natural Science Foundation of Guangxi 2023GXNSFDA026036One Thousand of Young and Middle-aged Key Teachers Training Program in Guangxi Colleges and Universities DC2300017000the National Natural Science Foundation of China NSFC 82002134
6 · The paper itself

Abstract

SHP-1, a nonreceptor protein tyrosine phosphatase encoded by ptpn6, has been regarded as a regulatory protein of hematopoietic cell biology for years. However, there is now increasing evidence to support its role in tumors. Thus, the role of ptpn6 for prognosis and immune regulation across 33 tumors was investigated, aiming to explore its functional heterogeneity and clinical significance in pan-cancer. Differential expression of ptpn6 was found between cancer and adjacent normal tissues, and its expression was significantly correlated with the prognosis of tumor patients. In most cancers, ptpn6 expression was significantly associated with immune infiltration. This was further confirmed by ptpn6-related genes/proteins enrichment analysis. Additionally, genetic alterations in ptpn6 was observed in most cancers. As for epigenetic changes, it's phosphorylation levels significantly altered in 6 tumors, while methylation levels significantly altered in 12 tumors. Notably, the methylation levels of ptpn6 were significantly decreased in 11 tumors, accompanied by its increased expression in 8 of them, suggesting that the hypomethylation may be related to its increased expression. Our results show that ptpn6 plays a specific role in tumor immunity and exerts a pleiotropic effect in a variety of tumors. It can serve as a prognostic factor for some cancers. Especially in LGG, KIRC, UCS and TGCT, the increased expression of ptpn6 is associated with poor prognosis and high immune infiltration. This aids in understanding the role of ptpn6 in tumor biology, and can provide insight into presenting a potential biomarker for poor prognosis and immune infiltration in cancers.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticNeoplasmsProtein Tyrosine Phosphatase, Non-Receptor Type 6Biomarkers, TumorEpigenesis, GeneticHumansPhosphorylationPrognosisBiomarkers, TumorProtein Tyrosine Phosphatase, Non-Receptor Type 6PTPN6 protein, humanImmune infiltrationPan-cancerPrognosisptpn6

Identifiers

PMID39367146
PMCPMC11452508

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