Evidence map›Paper›PMID 39366928›Full record

ArticleNature communications2024

Detection of host cell microprotein impurities in antibody drug products.

Ioanna Tzani, Marina Castro-Rivadeneyra, Paul Kelly, Lisa Strasser, Lin Zhang, Martin Clynes, Barry L Karger, Niall Barron, Jonathan Bones, Colin Clarke

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ioanna Tzani *National Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.ORCID 0000-0002-3282-8553
Marina Castro-Rivadeneyra *National Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.ORCID 0000-0001-8224-4241
Paul KellyNational Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.
Lisa StrasserNational Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.ORCID 0000-0002-4965-1651
Lin ZhangBioprocess R&D, Pfizer Inc. Andover, Massachusetts, USA.
Martin ClynesNational Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland.
Barry L KargerBarnett Institute, Northeastern University, 360 Huntington Ave, Boston, MA, USA.
Niall BarronNational Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.ORCID 0000-0003-4602-326X
Jonathan Bones *National Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland.ORCID 0000-0002-8978-2592
Colin Clarke *National Institute for Bioprocessing Research and Training, Fosters Avenue, Blackrock, Co, Dublin, Ireland. colin.clarke@nibrt.ie.ORCID 0000-0003-2817-9527

Funding

Science Foundation Ireland (SFI) 13/SIRG/2084Science Foundation Ireland (SFI) 15/CDA/3259
6 · The paper itself

Abstract

Chinese hamster ovary (CHO) cells are used to produce almost 90% of therapeutic monoclonal antibodies (mAbs) and antibody fusion proteins (Fc-fusion). The annotation of non-canonical translation events in these cellular factories remains incomplete, limiting our ability to study CHO cell biology and detect host cell protein (HCP) impurities in the final antibody drug product. We utilised ribosome footprint profiling (Ribo-seq) to identify novel open reading frames (ORFs) including N-terminal extensions and thousands of short ORFs (sORFs) predicted to encode microproteins. Mass spectrometry-based HCP analysis of eight commercial antibody drug products (7 mAbs and 1 Fc-fusion protein) using the extended protein sequence database revealed the presence of microprotein impurities. We present evidence that microprotein abundance varies with growth phase and can be affected by the cell culture environment. In addition, our work provides a vital resource to facilitate future studies of non-canonical translation and the regulation of protein synthesis in CHO cell lines.

Indexed as

Antibodies, MonoclonalCricetulusDrug ContaminationOpen Reading FramesAnimalsCHO CellsCricetinaeHumansMass SpectrometryProtein BiosynthesisRecombinant Fusion ProteinsRibosomesAntibodies, MonoclonalRecombinant Fusion Proteins

Identifiers

PMID39366928
PMCPMC11452709

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.