Evidence map›Paper›PMID 39365775›Full record

ArticlePloS one2024

Development of a prediction model for 30-day COVID-19 hospitalization and death in a national cohort of Veterans Health Administration patients-March 2022-April 2023.

David P Bui, Kristina L Bajema, Yuan Huang, Lei Yan, Yuli Li, Nallakkandi Rajeevan, Kristin Berry, Mazhgan Rowneki, Stephanie Argraves, Denise M Hynes and 3 more

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

David P BuiVeterans Affairs Portland Health Care System, Portland, Oregon, United States of America.ORCID 0000-0003-0861-0850
Kristina L BajemaVeterans Affairs Portland Health Care System, Portland, Oregon, United States of America.
Yuan HuangVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
Lei YanVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
Yuli LiVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
Nallakkandi RajeevanVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
Kristin BerryResearch and Development, Veterans Affairs Puget Sound Health Care System, Seattle, Washington, United States of America.
Mazhgan RownekiCenter of Innovation to Improve Veteran Involvement in Care (CIVIC), Veterans Affairs Portland Healthcare System, Portland, Oregon, United States of America.ORCID 0000-0002-9213-5134
Stephanie ArgravesVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
Denise M HynesCenter of Innovation to Improve Veteran Involvement in Care (CIVIC), Veterans Affairs Portland Healthcare System, Portland, Oregon, United States of America.
Grant HuangOffice of Research and Development, Veterans Health Administration, Washington, District of Columbia, United States of America.
Mihaela AslanVeterans Affairs Cooperative Studies Program Clinical Epidemiology Research Center (CSP CERC), Veterans Affairs Connecticut Healthcare System, West Haven, Connecticut, United States of America.
George N IoannouResearch and Development, Veterans Affairs Puget Sound Health Care System, Seattle, Washington, United States of America.ORCID 0000-0003-1796-8977

Funding

HSRD VA IK6 HX003395
6 · The paper itself

Abstract

objectiveThe epidemiology of COVID-19 has substantially changed since its emergence given the availability of effective vaccines, circulation of different viral variants, and re-infections. We aimed to develop models to predict 30-day COVID-19 hospitalization and death in the Omicron era for contemporary clinical and research applications.

methodsWe used comprehensive electronic health records from a national cohort of patients in the Veterans Health Administration (VHA) who tested positive for SARS-CoV-2 between March 1, 2022, and March 31, 2023. Full models incorporated 84 predictors, including demographics, comorbidities, and receipt of COVID-19 vaccinations and anti-SARS-CoV-2 treatments. Parsimonious models included 19 predictors. We created models for 30-day hospitalization or death, 30-day hospitalization, and 30-day all-cause mortality. We used the Super Learner ensemble machine learning algorithm to fit prediction models. Model performance was assessed with the area under the receiver operating characteristic curve (AUC), Brier scores, and calibration intercepts and slopes in a 20% holdout dataset.

resultsModels were trained and tested on 198,174 patients, of whom 8% were hospitalized or died within 30 days of testing positive. AUCs for the full models ranged from 0.80 (hospitalization) to 0.91 (death). Brier scores were close to 0, with the lowest error in the mortality model (Brier score: 0.01). All three models were well calibrated with calibration intercepts <0.23 and slopes <1.05. Parsimonious models performed comparably to full models.

conclusionsWe developed prediction models that accurately estimate COVID-19 hospitalization and mortality risk following emergence of the Omicron variant and in the setting of COVID-19 vaccinations and antiviral treatments. These models may be used for risk stratification to inform COVID-19 treatment and to identify high-risk patients for inclusion in clinical trials.

Indexed as

COVID-19HospitalizationSARS-CoV-2AdultAgedAged, 80 and overCohort StudiesCOVID-19 VaccinesFemaleHumansMachine LearningMaleMiddle AgedROC CurveUnited StatesUnited States Department of Veterans AffairsCOVID-19 Vaccines

Identifiers

PMID39365775
PMCPMC11451987

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.