Evidence map›Paper›PMID 39365489›Full record

ArticleMolecular biology reports2024

Characterization and expression analysis of the MADS-box gene AGL8 in cotton: insights into gene function differentiation in plant growth and stress resistance.

Zhicheng Wang, Yuefen Cao, Yurong Jiang, Mingquan Ding, Junkang Rong

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zhicheng WangCollege of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou, 311300, Zhejiang, China.
Yuefen CaoCollege of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou, 311300, Zhejiang, China. Caoyaofen@126.com.
Yurong JiangCollege of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou, 311300, Zhejiang, China.
Mingquan DingCollege of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou, 311300, Zhejiang, China.
Junkang RongCollege of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou, 311300, Zhejiang, China.

Funding

Initial Foundation of ZAFU 2023LFR028Natural Science Foundation of China 32171923Natural Science Foundation of Zhejiang Y21C130006
6 · The paper itself

Abstract

backgroundAGAMOUS-LIKE 8 (AGL8) belongs to the MADS-box family, which plays important roles in transcriptional regulation, sequence-specific DNA binding and other biological processes and molecular functions. The genome of cotton, a representative polyploid plant, contains multiple AGL8 genes. However, their functional differentiation is still unclear. METHODS AND

resultsIn this study, a comprehensive genomic analysis of AGL8 genes was conducted. Cotton AGL8s were subdivided into four subgroups (Groups 1, 2, 3, and 4) based on phylogenetic analysis, and different subgroups of AGL8s presented different characteristics, including different structures and conserved motifs. With respect to the promoter regions of the GhAGL8 genes, we successfully predicted cis-elements that respond to phytohormone signal transduction and the stress response of plants. Transcriptome data and real-time quantitative PCR validation indicated that three genes, namely, GH_D07G0744, GH_A03G0856 and GH_A07G0749, were highly induced by methyl jasmonate (MeJA), salicylic acid (SA), and abscisic acid (ABA), which indicated that they function in plant resistance to abiotic and biotic stresses.

conclusionsThe information from the gene structure, number and types of conserved domains, tissue-specific expression levels, and expression patterns under different treatments highlights the differences in sequence and function of the cotton AGL8 genes. Different AGL8s play roles in vegetative growth, reproductive development, and plant stress resistance. These results lay a foundation for further study of GhAGL8s in cotton.

Indexed as

Gene Expression Regulation, PlantGossypiumMADS Domain ProteinsPlant Growth RegulatorsPlant ProteinsStress, PhysiologicalAcetatesCyclopentanesGene Expression ProfilingOxylipinsPhylogenyPlant DevelopmentPromoter Regions, GeneticSalicylic AcidTranscriptomeAcetatesCyclopentanesMADS Domain Proteinsmethyl jasmonateOxylipinsPlant Growth RegulatorsPlant ProteinsSalicylic AcidAbiotic stressAGL8CottonGenome analysis

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.