Evidence map›Paper›PMID 39365459›Full record

ArticleJournal of molecular modeling2024

How to search for and reveal a hidden intermediate? The ELF topological description of non-synchronicity in double proton transfer reactions under oriented external electric field.

Vanessa Labet, Antoine Geoffroy-Neveux, Mohammad Esmaïl Alikhani

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Article in Journal of molecular modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Modulation of the Product Upon the Reaction of COJournal of computational chemistry · 2025
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vanessa LabetSorbonne Université CNRS, MONARIS, UMR8233, 75005, Paris, France. vanessa.labet@sorbonne-universite.fr.ORCID http://orcid.org/0000-0002-1190-6364
Antoine Geoffroy-NeveuxSorbonne Université CNRS, MONARIS, UMR8233, 75005, Paris, France.
Mohammad Esmaïl AlikhaniSorbonne Université CNRS, MONARIS, UMR8233, 75005, Paris, France. esmail.alikhani@sorbonne-universite.fr.ORCID http://orcid.org/0000-0001-8412-4147

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextThe nature of double intermolecular proton transfer was studied with the ELF topological approach in two model dimers (the formic acid homodimer and the 1,2,3-triazole-guanidine heterodimer) under an oriented external electric field. It has been shown that each of the two dimers can have either a one-step (one transition state structure) or two-step (two transition state structures) reaction path, depending on the intensity and orientation of the external electric field. The presence of a singularly broad shoulder (plateau in the case of homodimer and plateau-like for heterodimer) around the formal transition state structure results from the strong asynchronicity of the reaction. A careful ELF topological analysis of the nature of protons, hydride (localized) or roaming (delocalized) proton, along the reaction path allowed us to unambiguously classify the one-step mechanisms governing the double-proton transfer reactions into three distinct classes: (1) concerted-synchronous, when two events (roaming proton regions) completely overlap, (2) concerted-asynchronous, when two events (roaming proton regions) partially overlap, and (3) two-stage one-step non-concerted, when two roaming proton regions are separated by a "hidden intermediate region". All the structures belonging to this separatrix region are of the zwitterion form.

methodsGeometry optimization of the stationary points on the potential energy surface was performed using density functional theory-wB97XD functional-in combination with the 6-311+ +G(2d, 2p) basis set for all the atoms. All first-principles calculations were performed using the Gaussian 09 quantum chemical packages. We also used the electron localization function (ELF) to reveal the nature of the proton along the reaction path: a bound proton (hydride) becomes a roaming proton (carrying a tiny negative charge ≈ 0.3 e) exchanging with two adjacent atoms via two attractors (topological critical points with (3, - 3) signature). The ELF analyses were performed using the TopMod package.

Indexed as

AsynchronicityConcerted vs. stepwiseDouble proton transferElectric fieldELF topologyHidden intermediate

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.