ArticleQuantitative biology (Beijing, China)2024
Bioinformatics and biomedical informatics with ChatGPT: Year one review.
Article in Quantitative biology (Beijing, China), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A systematic review on the generative AI applications in human medical genetics.Frontiers in genetics · 2025Pooled it
- Applications of large-scale artificial intelligence models in bioinformatics.Quantitative biology (Beijing, China) · 2026Review
- Design and classify innovative antimicrobial and dual- and multi-functional peptides using generative artificial intelligence.Scientific reports · 2026Article
- Advancing battery research through large language models: A review.Innovation (Cambridge (Mass.)) · 2026Review
- Artificial Intelligence agents for biological research: a survey.Briefings in bioinformatics · 2026Article
- The unacknowledged co-author: LLM-mediated reasoning in plant metabolomics and its systematic blind spots.Frontiers in plant science · 2026Article
- Prompt-based bioinformatic pipeline generation for a multi-step metaviral workflow.Bioinformatics advances · 2026Article
- Longitudinal big biological data in the AI era.Molecular systems biology · 2025Review
- Large Language Models and Their Applications in Drug Discovery and Development: A Primer.Clinical and translational science · 2025Review
- Opportunities and considerations for using artificial intelligence in bioinformatics education.Bioinformatics advances · 2025Article
- Multimodal knowledge expansion widget powered by plant protein phosphorylation database and ChatGPT.Frontiers in bioinformatics · 2025Article
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics.Genome biology · 2024Article
- Foundation models for bioinformatics.Quantitative biology (Beijing, China) · 2024Article
- Bioinformatics and biomedical informatics with ChatGPT: Year one review.Quantitative biology (Beijing, China) · 2024Article
- Exploring the potential of large language model-based chatbots in challenges of ribosome profiling data analysis: a review.Briefings in bioinformatics · 2024Review
- Steering veridical large language model analyses by correcting and enriching generated database queries: first steps toward ChatGPT bioinformatics.Briefings in bioinformatics · 2024Article
- Biomedical relation extraction method based on ensemble learning and attention mechanism.BMC bioinformatics · 2024Article
Corrections and comments
- Update of
Authors and funding
6 authors.
Funding
Abstract
The year 2023 marked a significant surge in the exploration of applying large language model chatbots, notably Chat Generative Pre-trained Transformer (ChatGPT), across various disciplines. We surveyed the application of ChatGPT in bioinformatics and biomedical informatics throughout the year, covering omics, genetics, biomedical text mining, drug discovery, biomedical image understanding, bioinformatics programming, and bioinformatics education. Our survey delineates the current strengths and limitations of this chatbot in bioinformatics and offers insights into potential avenues for future developments.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.