Evidence map›Paper›PMID 39362773›Full record

ArticleGenes & development2024

YY1 knockout in pro-B cells impairs lineage commitment, enabling unusual hematopoietic lineage plasticity.

Sarmistha Banerjee, Sulagna Sanyal, Suchita Hodawadekar, Sarah Naiyer, Nasreen Bano, Anupam Banerjee, Joshua Rhoades, Dawei Dong, David Allman, Michael L Atchison

Abstract read
In one paragraph

Article in Genes & development, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Sarmistha BanerjeeDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Sulagna SanyalDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0009-0006-4509-8648
Suchita HodawadekarDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Sarah NaiyerDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0002-3961-5489
Nasreen BanoDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0003-3802-4908
Anupam BanerjeeDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Joshua RhoadesDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Dawei DongDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
David AllmanDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.ORCID 0000-0001-9345-1502
Michael L AtchisonDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA; atchison@vet.upenn.edu.ORCID 0000-0002-5496-1486

Funding

Very early plasma cell differentiationR01AI139123 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ALLMAN, DAVID M, ARGON, YAIR · 2018 to 2022
$3.0M
Mechanisms of lineage plasticity revealed by YY1 deficiency.R01AI162879 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2021 to 2025
$2.5M
Biochemical Mechanisms for Sustained Humoral ImmunityR01AI175185 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI David M Allman · 2023 to 2026
$2.5M
YY1-dependent chromatin structure stabilization of B lineage commitmentR01AI155540 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2021 to 2025
$2.5M
NIAID NIH HHS R01 AI139123NIAID NIH HHS R01 AI155540NIAID NIH HHS R01 AI162879NIAID NIH HHS R01 AI175185
6 · The paper itself

Abstract

During B-cell development, cells progress through multiple developmental stages, with the pro-B-cell stage defining commitment to the B-cell lineage. YY1 is a ubiquitous transcription factor that is capable of both activation and repression functions. We found here that knockout of YY1 at the pro-B-cell stage eliminates B lineage commitment. YY1 knockout pro-B cells can generate T lineage cells in vitro using the OP9-DL4 feeder system and in vivo after injection into sublethally irradiated Rag1

Indexed as

Cell LineagePrecursor Cells, B-LymphoidYY1 Transcription FactorAnimalsB-LymphocytesCell DifferentiationGene Knockout TechniquesHematopoiesisMiceMice, KnockoutT-LymphocytesYy1 protein, mouseYY1 Transcription Factoralternative lineagesB-cell developmenthematopoietic lineage plasticitylineage commitmentscATAC-seqscRNA-seqtranscriptionYY1

Identifiers

PMID39362773
PMCPMC11535188

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.