Evidence map›Paper›PMID 39361900›Full record

ArticleGlycobiology2024

Interactions that define the arrangement of sugar-binding sites in BDCA-2 and dectin-2 dimers.

Yu Liu, Jong-Won Kim, Hadar Feinberg, Nikeel Cull, William I Weis, Maureen E Taylor, Kurt Drickamer

Abstract read
In one paragraph

Article in Glycobiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yu LiuDepartment of Life Sciences, Sir Ernst Chain Building, Imperial College, Exhibition Road, London SW7 2AZ, United Kingdom.ORCID 0009-0009-0722-182X
Jong-Won KimDepartment of Life Sciences, Sir Ernst Chain Building, Imperial College, Exhibition Road, London SW7 2AZ, United Kingdom.ORCID 0009-0001-2802-7198
Hadar FeinbergDepartments of Structural Biology and Molecular and Cellular Physiology, Fairchild Building, Stanford University School of Medicine, 299 Campus Drive West, Stanford, CA 94305, United States.ORCID 0000-0002-9937-4699
Nikeel CullDepartment of Life Sciences, Sir Ernst Chain Building, Imperial College, Exhibition Road, London SW7 2AZ, United Kingdom.ORCID 0009-0006-0154-3893
William I WeisDepartments of Structural Biology and Molecular and Cellular Physiology, Fairchild Building, Stanford University School of Medicine, 299 Campus Drive West, Stanford, CA 94305, United States.ORCID 0000-0002-5583-6150
Maureen E TaylorDepartments of Structural Biology and Molecular and Cellular Physiology, Fairchild Building, Stanford University School of Medicine, 299 Campus Drive West, Stanford, CA 94305, United States.ORCID 0000-0001-8300-4987
Kurt DrickamerDepartment of Life Sciences, Sir Ernst Chain Building, Imperial College, Exhibition Road, London SW7 2AZ, United Kingdom.ORCID 0000-0001-5026-5996

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
China Scholarship Commission 201708060177Department of Energy Office of Biological and Environmental ResearchNational Institute of General Medical Science P30GM133894NIGMS NIH HHS P30 GM133894SLAC National Accelerator LaboratoryStanford Synchrotron Radiation LightsourceUnited Kingdom Research and Innovation Biotechnology and Biological Sciences Research Council BB/V014137/1U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences DE-AC02-76SF00515
6 · The paper itself

Abstract

The sugar-binding receptors dectin-2 and blood dendritic cell antigen 2 (BDCA-2) bind oligosaccharide ligands through extracellular carbohydrate-recognition domains (CRDs) and initiate intracellular signaling through Fc receptor γ adapters (FcRγ). Dectin-2 stimulates macrophages in response to pathogen binding while BDCA-2 modulates cytokine production in plasmacytoid dendritic cells. The oligomeric states of these receptors and the orientations of their CRDs have been investigated by analysis of a naturally occurring disulfide-bonded variant of BDCA-2 and by replacement of transmembrane domains with N-terminal dimerization domains to create extracellular domain dimers of both dectin-2 and BDCA-2. Analysis of these constructs, as well as previously described crystal structures of the CRDs from these proteins and a novel structure of an extended version of the extracellular domain of dectin-2, showed that there is only limited interaction of the CRDs in the dimers, but interactions can be stabilized by the presence of the neck region. The resulting orientation of sugar-binding sites in the dimers would favor crosslinking of multiple dimers by oligosaccharide ligands, causing clustering of FcRγ to initiate signaling.

Indexed as

Lectins, C-TypeBinding SitesHumansMembrane GlycoproteinsProtein BindingProtein MultimerizationReceptors, ImmunologicCLEC4C protein, humanLectins, C-TypeMembrane GlycoproteinsReceptors, Immunologiccarbohydrate-binding proteincrystal structureglycoproteinlectinreceptor

Identifiers

PMID39361900
PMCPMC11632364

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.