Evidence map›Paper›PMID 39361644›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Experimental localization of metal-binding sites reveals the role of metal ions in type II DNA topoisomerases.

Beijia Wang, Shabir Najmudin, Xiao-Su Pan, Vitaliy Mykhaylyk, Christian Orr, Armin Wagner, Lata Govada, Naomi E Chayen, L Mark Fisher, Mark R Sanderson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Beijia Wang *Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.ORCID 0009-0005-8674-5170
Shabir Najmudin *Molecular and Cellular Sciences Section, Neuroscience and Cell Biology Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom.ORCID 0000-0002-0429-5454
Xiao-Su Pan *Molecular and Cellular Sciences Section, Neuroscience and Cell Biology Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom.
Vitaliy Mykhaylyk *Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.
Christian Orr *Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID 0000-0002-6137-8969
Armin WagnerDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID 0000-0001-8995-7324
Lata GovadaDepartment of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Naomi E ChayenDepartment of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.ORCID 0000-0003-2861-2458
L Mark FisherMolecular and Cellular Sciences Section, Neuroscience and Cell Biology Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom.ORCID 0000-0002-2172-3369
Mark R SandersonDepartment of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.

Funding

Medical Research Centre (MRC) MR/T000848
6 · The paper itself

Abstract

Metal ions have important roles in supporting the catalytic activity of DNA-regulating enzymes such as topoisomerases (topos). Bacterial type II topos, gyrases and topo IV, are primary drug targets for fluoroquinolones, a class of clinically relevant antibacterials requiring metal ions for efficient drug binding. While the presence of metal ions in topos has been elucidated in biochemical studies, accurate location and assignment of metal ions in structural studies have historically posed significant challenges. Recent advances in X-ray crystallography address these limitations by extending the experimental capabilities into the long-wavelength range, exploiting the anomalous contrast from light elements of biological relevance. This breakthrough enables us to confirm experimentally the locations of Mg

Indexed as

MagnesiumStreptococcus pneumoniaeBacterial ProteinsBinding SitesChloridesCrystallography, X-RayDNA Topoisomerase IVDNA Topoisomerases, Type IIFluoroquinolonesIonsMetalsModels, MolecularPotassiumBacterial ProteinsChloridesDNA Topoisomerase IVDNA Topoisomerases, Type IIFluoroquinolonesIonsMagnesiumMetalsPotassiumfluoroquinolonesLW X-ray crystallographymetal ionstopoisomerases

Identifiers

PMID39361644
PMCPMC11474082

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.