Evidence map›Paper›PMID 39358692›Full record

ArticleBMC plant biology2024

Cy-1, a major QTL for tomato leaf curl New Delhi virus resistance, harbors a gene encoding a DFDGD-Class RNA-dependent RNA polymerase in cucumber (Cucumis sativus).

Sota Koeda, Chihiro Yamamoto, Hiroto Yamamoto, Kohei Fujishiro, Ryoma Mori, Momoka Okamoto, Atsushi J Nagano, Takaaki Mashiko

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Ey-1 encodes a DEDDh exonuclease in eggplant (Solanum melongena), providing a novel pathway for begomovirus resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  3. Article
  4. A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection.The Plant journal : for cell and molecular biology · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sota KoedaGraduate School of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan. 818sota@nara.kindai.ac.jp.ORCID http://orcid.org/0000-0001-5921-8432
Chihiro YamamotoGraduate School of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan.
Hiroto YamamotoGraduate School of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan.
Kohei FujishiroFaculty of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan.
Ryoma MoriFaculty of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan.
Momoka OkamotoFaculty of Agriculture, Kindai University, Nara, Nara, 631-8505, Japan.
Atsushi J NaganoFaculty of Agriculture, Ryukoku University, Otsu, Shiga, 520-2914, Japan.ORCID http://orcid.org/0000-0001-7891-5049
Takaaki MashikoTakii & Co. Ltd, Konan, Shiga, 520-3231, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTomato leaf curl New Delhi virus (ToLCNDV) (family Geminiviridae, genus Begomovirus) is a significant threat to cucumber (Cucumis sativus) production in many regions. Previous studies have reported the genetic mapping of loci related to ToLCNDV resistance, but no resistance genes have been identified.

resultsWe conducted map-based cloning of the ToLCNDV resistance gene in cucumber accession No.44. Agroinfiltration and graft-inoculation analyses confirmed the resistance of No.44 to ToLCNDV isolates from the Mediterranean and Asian countries. Initial mapping involving two rounds of phenotyping with two independent F

conclusionsForward and reverse genetic approaches identified CsRDR3, which encodes a DFDGD-class RNA-dependent RNA polymerase, as the gene responsible for ToLCNDV resistance at the major QTL Cy-1 on chromosome 1 in cucumber. Marker-assisted breeding of ToLCNDV resistance in cucumber will be expedited by using No.44 and the DNA markers developed in this study.

Indexed as

BegomovirusCucumis sativusDisease ResistancePlant DiseasesQuantitative Trait LociRNA-Dependent RNA PolymeraseChromosome MappingChromosomes, PlantGenes, PlantPlant ProteinsPlant ProteinsRNA-Dependent RNA PolymeraseBegomovirusCucurbitGeminivirusGenetic mappingMarker-assisted breedingRDRResistance geneToLCNDVVirus-induced gene silencing (VIGS)

Identifiers

PMID39358692
PMCPMC11446051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.