Evidence map›Paper›PMID 39358384›Full record

ArticleNPJ systems biology and applications2024

Inertial effect of cell state velocity on the quiescence-proliferation fate decision.

Harish Venkatachalapathy, Cole Brzakala, Eric Batchelor, Samira M Azarin, Casim A Sarkar

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Harish VenkatachalapathyDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-1623-4704
Cole BrzakalaDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0009-0007-9970-8111
Eric BatchelorDepartment of Integrative Biology and Physiology, University of Minnesota, Minneapolis, MN, USA.
Samira M AzarinDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA. azarin@umn.edu.
Casim A SarkarDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, MN, USA. csarkar@umn.edu.ORCID http://orcid.org/0000-0002-0276-8203

Funding

Analysis and Engineering of Cell SignalingR35GM136309 · NIGMS · UNIVERSITY OF MINNESOTA · PI Casim Sarkar · 2020 to 2026
$2.3M
NIGMS NIH HHS R35 GM136309U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM136309
6 · The paper itself

Abstract

Energy landscapes can provide intuitive depictions of population heterogeneity and dynamics. However, it is unclear whether individual cell behavior, hypothesized to be determined by initial position and noise, is faithfully recapitulated. Using the p21-/Cdk2-dependent quiescence-proliferation decision in breast cancer dormancy as a testbed, we examined single-cell dynamics on the landscape when perturbed by hypoxia, a dormancy-inducing stress. Combining trajectory-based energy landscape generation with single-cell time-lapse microscopy, we found that a combination of initial position and velocity on a p21/Cdk2 landscape, but not position alone, was required to explain the observed cell fate heterogeneity under hypoxia. This is likely due to additional cell state information such as epigenetic features and/or other species encoded in velocity but missing in instantaneous position determined by p21 and Cdk2 levels alone. Here, velocity dependence manifested as inertia: cells with higher cell cycle velocities prior to hypoxia continued progressing along the cell cycle under hypoxia, resisting the change in landscape towards cell cycle exit. Such inertial effects may markedly influence cell fate trajectories in tumors and other dynamically changing microenvironments where cell state transitions are governed by coordination across several biochemical species.

Indexed as

Cell ProliferationCyclin-Dependent Kinase 2Breast NeoplasmsCell CycleCell Line, TumorCyclin-Dependent Kinase Inhibitor p21FemaleHumansCDK2 protein, humanCyclin-Dependent Kinase 2Cyclin-Dependent Kinase Inhibitor p21

Identifiers

PMID39358384
PMCPMC11447052

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.