Evidence map›Paper›PMID 39356670›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Isoform-specific C-terminal phosphorylation drives autoinhibition of Casein kinase 1.

Rachel L Harold, Nikhil K Tulsian, Rajesh Narasimamurthy, Noelle Yaitanes, Maria G Ayala Hernandez, Hsiau-Wei Lee, Priya Crosby, Sarvind M Tripathi, David M Virshup, Carrie L Partch

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Plant signaling & behavior · 2026
    Article
  2. Review
  3. Gut microbiome-produced bile acid metabolite lengthens the circadian period in host intestinal cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Molecular genetic characterization ofbioRxiv : the preprint server for biology · 2025
    Article
  9. Fuzziness in enzymatic catalysis.Current opinion in structural biology · 2025
    Review
  10. Review
  11. Isoform-specific C-terminal phosphorylation drives autoinhibition of Casein kinase 1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Rachel L Harold *Department of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0002-1684-4780
Nikhil K Tulsian *Department of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.ORCID 0000-0001-6577-6748
Rajesh NarasimamurthyProgram in Cancer and Stem Cell Biology, Duke-National University of Singapore Medical School, Singapore 169857, Singapore.ORCID 0000-0003-4224-3791
Noelle YaitanesDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.
Maria G Ayala HernandezDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.
Hsiau-Wei LeeDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.
Priya CrosbyDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0002-7532-7708
Sarvind M TripathiDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0002-6959-0577
David M VirshupProgram in Cancer and Stem Cell Biology, Duke-National University of Singapore Medical School, Singapore 169857, Singapore.ORCID 0000-0001-6976-850X
Carrie L PartchDepartment of Chemistry & Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0002-4677-2861

Funding

Structures and mechanisms of circadian rhythms from cyanobacteria to humansR35GM141849 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2021 to 2025
$4.6M
Exploring the structural basis for 24-hour timekeeping in mammalsR01GM107069 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2013 to 2020
$3.2M
HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM107069HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM14189Ministry of Health -Singapore (MOH) MOH-000600NIGMS NIH HHS R01 GM107069NIGMS NIH HHS R35 GM141849
6 · The paper itself

Abstract

Casein kinase 1δ (CK1δ) controls essential biological processes including circadian rhythms and wingless-related integration site (Wnt) signaling, but how its activity is regulated is not well understood. CK1δ is inhibited by autophosphorylation of its intrinsically disordered C-terminal tail. Two CK1 splice variants, δ1 and δ2, are known to have very different effects on circadian rhythms. These variants differ only in the last 16 residues of the tail, referred to as the extreme C termini (XCT), but with marked changes in potential phosphorylation sites. Here, we test whether the XCT of these variants have different effects in autoinhibition of the kinase. Using NMR and hydrogen/deuterium exchange mass spectrometry, we show that the δ1 XCT is preferentially phosphorylated by the kinase and the δ1 tail makes more extensive interactions across the kinase domain. Mutation of δ1-specific XCT phosphorylation sites increases kinase activity both in vitro and in cells and leads to changes in the circadian period, similar to what is reported in vivo. Mechanistically, loss of the phosphorylation sites in XCT disrupts tail interaction with the kinase domain. δ1 autoinhibition relies on conserved anion-binding sites around the CK1 active site, demonstrating a common mode of product inhibition of CK1δ. These findings demonstrate how a phosphorylation cycle controls the activity of this essential kinase.

Indexed as

Casein Kinase IdeltaAnimalsCasein Kinase ICircadian RhythmHEK293 CellsHumansMiceMutationPhosphorylationProtein DomainsCasein Kinase ICasein Kinase Ideltacircadian rhythmsintrinsically disordered proteinskinase

Identifiers

PMID39356670
PMCPMC11474029

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.