Evidence map›Paper›PMID 39354694›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

Unveiling Cas12j Trans-Cleavage Activity for CRISPR Diagnostics: Application to miRNA Detection in Lung Cancer Diagnosis.

Ju-Eun Kang, Hansol Kim, Young-Hoon Lee, Ha-Yeong Lee, Yeonkyung Park, Hyowon Jang, Jae-Rin Kim, Min-Young Lee, Byeong-Ho Jeong, Ju-Young Byun and 6 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ju-Eun KangCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Hansol KimBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Young-Hoon LeeCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Ha-Yeong LeeCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Yeonkyung ParkBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Hyowon JangBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Jae-Rin KimCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Min-Young LeeDepartment of Nano-Bio Convergence, Surface Materials Division, Korea Institute of Materials Science (KIMS), Changwon, Gyeongsangnam-do, 51508, Republic of Korea.
Byeong-Ho JeongDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Samsung Medical Center, Sungkyunkwan University (SKKU) School of Medicine, Seoul, 06351, Republic of Korea.
Ju-Young ByunCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Seung Jun KimCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Eun-Kyung LimBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Juyeon JungBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Eui-Jeon WooCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Taejoon KangBionanotechnology Research Center, KRIBB, Daejeon, 34141, Republic of Korea.ORCID 0000-0002-5387-6458
Kwang-Hyun ParkCritical Diseases Diagnostics Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.

Funding

Korea Environmental Industry and Technology Institute 2021003370003Korea Evaluation Institute of Industrial Technology RS-2022-00154853Korea Evaluation Institute of Industrial Technology RS-2024-00403563Korea Evaluation Institute of Industrial Technology RS-2024-00432382Korea Research Institute of Bioscience and Biotechnology KGM5382423Korea Research Institute of Bioscience and Biotechnology KGM5472413Korea Research Institute of Bioscience and Biotechnology KGM9952314MAFRA RS-2024-00401639MSIT 2021M3A9G802559921MSIT 2021M3E5E3080844MSIT 2021M3H4A1A02051048MSIT 2021M3H4A1A0205104821MSIT 2021R1A2C201132814MSIT 2022R1C1C100527013MSIT 2022R1C1C1008815MSIT 2023R1A2C2005185MSIT CRC22023-500MSIT RS-2024-00348576MSIT RS-2024-00438316National NanoFab Center
6 · The paper itself

Abstract

Cas12j, a hypercompact and efficient Cas protein, has potential for use in CRISPR diagnostics, but has not yet been used because the trans-cleavage activity of Cas12j is veiled. Here, the trans-cleavage behavior of Cas12j1, 2, and 3 variants and evaluate their suitability for nucleic acid detection is unveiled. The target preferences and mismatch specificities of the Cas12j variants are precisely investigated and the optimal Cas12j reaction conditions are determined. As a result, the EXP-J assay for miRNA detection by harnessing the robust trans-cleavage activity of Cas12j on short ssDNA is developed. The EXP-J method demonstrates exceptional detection capabilities for miRNAs, proving that Cas12j can be a pivotal component in molecular diagnostics. Furthermore, the translational potential of the EXP-J assay is validated by detecting oncogenic miRNAs in plasma samples from lung cancer patients. This investigation not only elucidates the trans-cleavage characteristics of Cas12j variants, but also advances the Cas12j-based diagnostic toolkit.

Indexed as

CRISPR-Cas SystemsLung NeoplasmsMicroRNAsCRISPR-Associated ProteinsHumansCRISPR-Associated ProteinsMicroRNAsCas12jCRISPRliquid biopsylung cancermiRNA

Identifiers

PMID39354694
PMCPMC11600238

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.