Evidence map›Paper›PMID 39353907›Full record

ArticleNature communications2024

An atlas of the aging mouse proteome reveals the features of age-related post-transcriptional dysregulation.

Masaki Takasugi, Yoshiki Nonaka, Kazuaki Takemura, Yuya Yoshida, Frank Stein, Jennifer J Schwarz, Jun Adachi, Junko Satoh, Shinji Ito, Gregory Tombline and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Masaki TakasugiDepartment of Pathophysiology, Osaka Metropolitan University, Graduate School of Medicine, Osaka, Japan. mtjfcr@gmail.com.ORCID 0000-0001-9880-1225
Yoshiki Nonaka *Department of Pathophysiology, Osaka Metropolitan University, Graduate School of Medicine, Osaka, Japan.
Kazuaki Takemura *Department of Pathophysiology, Osaka Metropolitan University, Graduate School of Medicine, Osaka, Japan.
Yuya Yoshida *Department of Pathophysiology, Osaka Metropolitan University, Graduate School of Medicine, Osaka, Japan.
Frank SteinProteomic Core Facility, EMBL Heidelberg, Heidelberg, Germany.ORCID 0000-0001-9695-1692
Jennifer J SchwarzProteomic Core Facility, EMBL Heidelberg, Heidelberg, Germany.ORCID 0000-0002-2406-0185
Jun AdachiLaboratory of Proteomics for Drug Discovery, Center for Drug Design Research, National Institute of Biomedical Innovation, Health and Nutrition, Osaka, Japan.ORCID 0000-0003-1220-3246
Junko SatohMedical Research Support Center, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shinji ItoMedical Research Support Center, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Gregory TomblineDepartment of Biology, University of Rochester, Rochester, NY, USA.
Seyed Ali BiashadDepartment of Biology, University of Rochester, Rochester, NY, USA.
Andrei SeluanovDepartment of Biology, University of Rochester, Rochester, NY, USA.ORCID 0000-0003-3400-538X
Vera GorbunovaDepartment of Biology, University of Rochester, Rochester, NY, USA.
Naoko OhtaniDepartment of Pathophysiology, Osaka Metropolitan University, Graduate School of Medicine, Osaka, Japan. naoko.ohtani@omu.ac.jp.ORCID 0000-0001-8934-0797

Funding

The role of hyaluronan in longevity and cancer resistance of longest-lived rodentP01AG047200 · NIA · UNIVERSITY OF ROCHESTER · PI Vadim N. Gladyshev · 2014 to 2026
$36.9M
Somatic Activation of Retrotransposition: A New Molecular Mechanism of Aging?P01AG051449 · NIA · BROWN UNIVERSITY · PI John M Sedivy · 2016 to 2026
$30.4M
The role of SIRT6 posttranslational modifications in aging and genome stability. Supplement: Testing SIRT6 activators as potential Alzheimer's disease therapy.R01AG027237 · NIA · UNIVERSITY OF ROCHESTER · PI Vera Gorbunova · 2006 to 2026
$6.2M
Regulation of epigenome stability by SIRT6 during aging. Supplement: Does centenarian variant of SIRT6 or bowhead whale SIRT6 confer protection from Alzheimer's disease?R37AG046320 · NIA · UNIVERSITY OF ROCHESTER · PI Andrei Seluanov · 2019 to 2026
$4.7M
Regulation of genome stability by SITR6R01AG046320 · NIA · UNIVERSITY OF ROCHESTER · PI SELUANOV, ANDREI · 2014 to 2018
$1.9M
Astellas Foundation for Research on Metabolic Disorders 2021A3097MEXT | Japan Science and Technology Agency (JST) JPMJPR2384MEXT | Japan Society for the Promotion of Science (JSPS) 23K10963Mizutani Foundation for Glycoscience (Mizutani Foundation) 230001Nakatomi Foundation N/ANIA NIH HHS P01 AG047200NIA NIH HHS P01 AG051449NIA NIH HHS R01 AG027237NIA NIH HHS R01 AG046320NIA NIH HHS R37 AG046320Senri Life Science Foundation 82142-00027Suzuken Memorial Foundation N/A
6 · The paper itself

Abstract

To what extent and how post-transcriptional dysregulation affects aging proteome remains unclear. Here, we provide proteomic data of whole-tissue lysates (WTL) and low-solubility protein-enriched fractions (LSF) of major tissues collected from mice of 6, 15, 24, and 30 months of age. Low-solubility proteins are preferentially affected by age and the analysis of LSF doubles the number of proteins identified to be differentially expressed with age. Simultaneous analysis of proteome and transcriptome using the same tissue homogenates reveals the features of age-related post-transcriptional dysregulation. Post-transcriptional dysregulation becomes evident especially after 24 months of age and age-related post-transcriptional dysregulation leads to accumulation of core matrisome proteins and reduction of mitochondrial membrane proteins in multiple tissues. Based on our in-depth proteomic data and sample-matched transcriptome data of adult, middle-aged, old, and geriatric mice, we construct the Mouse aging proteomic atlas ( https://aging-proteomics.info/ ), which provides a thorough and integrative view of age-related gene expression changes.

Indexed as

AgingProteomeProteomicsTranscriptomeAnimalsGene Expression RegulationMaleMiceMice, Inbred C57BLProteome

Identifiers

PMID39353907
PMCPMC11445428

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.