Evidence map›Paper›PMID 39352750›Full record

ArticleJCI insight2024

Integrated analysis of rectal mucosal microbiome and transcriptome reveals a distinct microenvironment among young MSM.

Cassie G Ackerley, S Abigail Smith, Phillip M Murray, Praveen K Amancha, Vanessa E Van Doren, Gregory K Tharp, Robert A Arthur, Rama R Amara, Yi-Juan Hu, Colleen F Kelley

Abstract read
In one paragraph

Article in JCI insight, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Anaerobe-Driven Inflammation and Epithelial Barrier Disruption in Genital HIV Acquisition.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cassie G AckerleyThe Hope Clinic of the Emory Vaccine Research Center, Division of Infectious Disease, Department of Medicine, and.
S Abigail SmithThe Hope Clinic of the Emory Vaccine Research Center, Division of Infectious Disease, Department of Medicine, and.
Phillip M MurrayThe Hope Clinic of the Emory Vaccine Research Center, Division of Infectious Disease, Department of Medicine, and.
Praveen K AmanchaAlexion Pharmaceuticals, Seaport, Massachusetts, USA.
Vanessa E Van DorenThe Hope Clinic of the Emory Vaccine Research Center, Division of Infectious Disease, Department of Medicine, and.
Gregory K TharpNon Human Primate Genomics Core, Emory National Primate Research Center.
Robert A ArthurEmory Integrated Computational Core.
Rama R AmaraEmory National Primate Research Center, and.
Yi-Juan HuDepartment of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Colleen F KelleyThe Hope Clinic of the Emory Vaccine Research Center, Division of Infectious Disease, Department of Medicine, and.

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Neuro HPA Project 1U54AG062334 · NIA · EMORY UNIVERSITY · PI Ighovwerha Ofotokun · 2018 to 2026
$12.2M
Emory University BIRCWH ProgramK12HD085850 · NICHD · EMORY UNIVERSITY · PI OFOTOKUN, IGHOVWERHA, STERK, CLAIRE E · 2015 to 2023
$4.4M
Research Training in Translational Gastroenterology and HepatologyT32DK108735 · NIDDK · EMORY UNIVERSITY · PI SUBRA KUGATHASAN · 2016 to 2026
$2.6M
Understanding Rectal HIV transmission among At-risk MSM: Age, Intercourse, and Mucosal InjurR01AI128799 · NIAID · EMORY UNIVERSITY · PI KELLEY, COLLEEN F · 2017 to 2020
$2.4M
Sex, Gender, and HIV Transmission: Defining the Impact of Biological Sex and Sex Hormones on Epithelial and Immune Cell Transcriptomics and HIV Transmission in Human Rectal TissuesK23AI177081 · NIAID · EMORY UNIVERSITY · PI GRIMSLEY ACKERLEY, CASSIE · 2023 to 2025
$517k
NIAID NIH HHS K23 AI177081NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI128799NIA NIH HHS U54 AG062334NICHD NIH HHS K12 HD085850NIDDK NIH HHS T32 DK108735
6 · The paper itself

Abstract

Crosstalk between the microbiome and gut mucosa-resident immune cells plays a pivotal role in modulating immune responses to pathogens, including responses to HIV infection. However, how these interactions may differ between young men who have sex with men (YMSM) disproportionately impacted by HIV, as compared with older adult MSM (AMSM), is not well understood. A broad analysis of associations between the microbiome and rectal transcriptome revealed 10 microbial families/genera correlated with immunologic gene pathways. Specifically, the rectal transcriptome of YMSM was characterized by upregulation of T cell activation/differentiation pathways and signaling from multiple cytokine families compared with AMSM. The microbiome of YMSM was enriched with pathogenic genera, including Peptostreptococcus, shown to be positively correlated with type I IFN pathways important for antiviral immunity. These findings demonstrate that YMSM have a unique immune phenotype and rectal microenvironment and support further evaluation of biological factors that influence rectal HIV transmission.

Indexed as

Gastrointestinal MicrobiomeHIV InfectionsHomosexuality, MaleIntestinal MucosaRectumTranscriptomeAdultHumansMaleMiddle AgedYoung AdultAdaptive immunityImmunologyInnate immunityMicrobiologyTranscription

Identifiers

PMID39352750
PMCPMC11601568

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.