Evidence map›Paper›PMID 39351298›Full record

ArticleFrontiers in microbiology2024

Analysis of soft rot

Xing Ma, Xiuyan Zhang, Paul Stodghill, Renee Rioux, Smita Shrestha, Brooke Babler, Hannah Rivedal, Kenneth Frost, Jianjun Hao, Gary Secor and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xing MaPlant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, United States.
Xiuyan ZhangSchool of Food and Agriculture, University of Maine, Orono, ME, United States.
Paul StodghillPlant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, United States.
Renee RiouxDepartment of Plant Pathology, University of Wisconsin-Madison, Madison, WI, United States.
Smita ShresthaDepartment of Plant Pathology, University of Wisconsin-Madison, Madison, WI, United States.
Brooke BablerWisconsin Seed Potato Certification Program, Department of Plant Pathology, University of Wisconsin-Madison, Middleton, WI, United States.
Hannah RivedalForage Seed and Cereal Research Unit, United States Department of Agriculture-Agricultural Research Service, Corvallis, OR, United States.
Kenneth FrostDepartment of Botany and Plant Pathology and Hermiston Agricultural Research and Extension Center, Oregon State University, Hermiston, OR, United States.
Jianjun HaoSchool of Food and Agriculture, University of Maine, Orono, ME, United States.
Gary SecorDepartment of Plant Pathology, North Dakota State University, Fargo, ND, United States.
Bryan SwinglePlant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Soft rot Methods: We used whole-genome sequencing based analysis to describe the current distribution and epidemiology of SRP isolated from diseased potato samples obtained from commercial potato cropping systems in the United States. Our primary objectives in the present study were to: (1) identify the species of these SRP isolates recovered from potato samples across 14 states in the US, (2) describe the variation among SRP isolates from various US locations and track their temporal changes, and (3) evaluate the evolutionary relationships among these SRP isolates to deduce their source. We collected 118 SRP strains from diseased potato plants and tubers in 14 states between 2015 and 2022. Results: We identified three Discussion: The prevalence of this specific group of

Indexed as

DickeyaPectobacteriaceapotatosoft rot and blackleg diseasewhole genome sequencing

Identifiers

PMID39351298
PMCPMC11439646

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.