Evidence map›Paper›PMID 39350166›Full record

ArticleBMC medical genomics2024

Diagnostic yield of exome sequencing-based copy number variation analysis in Mendelian disorders: a clinical application.

Tahir Atik, Enise Avci Durmusalioglu, Esra Isik, Melis Kose, Seda Kanmaz, Ayca Aykut, Asude Durmaz, Ferda Ozkinay, Ozgur Cogulu

Abstract read
In one paragraph

Article in BMC medical genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Chromosomal Microarray: Still Relevant in NGS Era.Indian journal of pediatrics · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tahir AtikPediatric Genetics, Ege University, Izmir, Turkey.
Enise Avci DurmusaliogluPediatric Genetics, Ege University, Izmir, Turkey. eniseavci.ea@gmail.com.ORCID 0000-0002-0582-8881
Esra IsikPediatric Genetics, Ege University, Izmir, Turkey.
Melis KoseDepartment of Genetics, The Children Hospital of Philadelphia, Mitochondrial Medicine Frontier Program, Philadelphia, USA.
Seda KanmazPediatric Neurology, Ege University, Izmir, Turkey.
Ayca AykutMedical Genetics, Ege University, Izmir, Turkey.
Asude DurmazMedical Genetics, Ege University, Izmir, Turkey.
Ferda OzkinayPediatric Genetics, Ege University, Izmir, Turkey.
Ozgur CoguluPediatric Genetics, Ege University, Izmir, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Next-generation sequencing (NGS) coupled with bioinformatic tools has revolutionized the detection of copy number variations (CNVs), which are implicated in the emergence of Mendelian disorders. In this study, we evaluated the diagnostic yield of exome sequencing-based CNV analysis in 449 patients with suspected Mendelian disorders. We aimed to assess the diagnostic yield of this recently utilized method and expand the clinical spectrum of intragenic CNVs. The cohort underwent whole exome sequencing (WES) and clinical exome sequencing (CES). Using GATK-gCNV, we identified 12 pathogenic CNVs that correlated with their clinical findings and resulting in a diagnostic yield of 2.67%. Importantly, the study emphasizes the role of CNVs in the etiology of Mendelian disorders and highlights the value of exome sequencing-based CNV analysis in routine diagnostic processes.

Indexed as

DNA Copy Number VariationsExome SequencingGenetic Diseases, InbornAdolescentAdultChildChild, PreschoolExomeFemaleHigh-Throughput Nucleotide SequencingHumansInfantMaleMiddle AgedYoung AdultCNV analysisCopy number variationsMendelian disordersNext-generation sequencing

Identifiers

PMID39350166
PMCPMC11441242

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.