Evidence map›Paper›PMID 39349514›Full record

ArticleScientific reports2024

Non-canonical chromatin-based functions for the threonine metabolic pathway.

Jennifer K Chik, Xue Bessie Su, Stephen Klepin, Jessica Raygoza, Lorraine Pillus

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jennifer K ChikDepartment of Molecular Biology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0347, USA.
Xue Bessie SuDepartment of Molecular Biology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0347, USA.
Stephen KlepinDepartment of Molecular Biology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0347, USA.
Jessica RaygozaDepartment of Molecular Biology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0347, USA.
Lorraine PillusDepartment of Molecular Biology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0347, USA. lpillus@ucsd.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emerging class of multi-functional proteins known as moonlighters challenges the "one protein, one function" mentality by demonstrating crosstalk between biological pathways that were previously thought to be functionally discrete. Here, we present new links between amino acid metabolism and chromatin regulation, two biological pathways that are critical for cellular and organismal homeostasis. We discovered that the threonine biosynthetic pathway is required for the transcriptional silencing of ribosomal DNA (rDNA) in Saccharomyces cerevisiae. The enzymes in the pathway promote rDNA silencing through distinct mechanisms as a subset of silencing phenotypes was rescued with exogenous threonine. In addition, we found that a key pathway enzyme, homoserine dehydrogenase, promotes DNA repair through a mechanism involving the MRX complex, a major player in DNA double strand break repair. These data further the understanding of enzymes with non-canonical roles, here demonstrated within the threonine biosynthetic pathway, and provide insight into their roles as potential anti-fungal pharmaceutical targets.

Indexed as

ChromatinDNA RepairSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThreonineDNA, RibosomalGene Expression Regulation, FungalGene SilencingMetabolic Networks and PathwaysChromatinDNA, RibosomalSaccharomyces cerevisiae ProteinsThreonine

Identifiers

PMID39349514
PMCPMC11442984

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.