Evidence map›Paper›PMID 39348417›Full record

ArticlePLoS pathogens2024

Pathogen contingency loci and the evolution of host specificity: Simple sequence repeats mediate Bartonella adaptation to a wild rodent host.

Ruth Rodríguez-Pastor, Nadav Knossow, Naama Shahar, Adam Z Hasik, Daniel E Deatherage, Ricardo Gutiérrez, Shimon Harrus, Luis Zaman, Richard E Lenski, Jeffrey E Barrick and 1 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Molecular surveillance ofInternational journal for parasitology. Parasites and wildlife · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ruth Rodríguez-PastorJacob Blaustein Center for Scientific Cooperation, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Nadav KnossowMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Naama ShaharMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Adam Z HasikJacob Blaustein Center for Scientific Cooperation, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.
Daniel E DeatherageDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America.
Ricardo GutiérrezNational Reference Center for Bacteriology, Costa Rican Institute for Research and Teaching in Nutrition and Health (Inciensa), Cartago, Costa Rica.
Shimon HarrusKoret School of Veterinary Medicine, Faculty of Agricultural, Nutritional and Environmental Sciences, The Hebrew University of Jerusalem, Rehovot, Israel.
Luis ZamanDepartment of Ecology and Evolutionary Biology, Center for the Study of Complex Systems, University of Michigan, Ann Arbor, Michigan, United States of America.
Richard E LenskiDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, United States of America.
Jeffrey E BarrickDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0003-0888-7358
Hadas HawlenaMitrani Department of Desert Ecology, Swiss Institute for Dryland Environmental and Energy Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel.ORCID 0000-0002-0634-2920

Funding

U.S. Department of Agriculture 7008075U.S.-Israel Binational Science Foundation 2017708U.S. National Science Foundation DEB-1813069
6 · The paper itself

Abstract

Parasites, including pathogens, can adapt to better exploit their hosts on many scales, ranging from within an infection of a single individual to series of infections spanning multiple host species. However, little is known about how the genomes of parasites in natural communities evolve when they face diverse hosts. We investigated how Bartonella bacteria that circulate in rodent communities in the dunes of the Negev Desert in Israel adapt to different species of rodent hosts. We propagated 15 Bartonella populations through infections of either a single host species (Gerbillus andersoni or Gerbillus pyramidum) or alternating between the two. After 20 rodent passages, strains with de novo mutations replaced the ancestor in most populations. Mutations in two mononucleotide simple sequence repeats (SSRs) that caused frameshifts in the same adhesin gene dominated the evolutionary dynamics. They appeared exclusively in populations that encountered G. andersoni and altered the dynamics of infections of this host. Similar SSRs in other genes are conserved and exhibit ON/OFF variation in Bartonella isolates from the Negev Desert dunes. Our results suggest that SSR-based contingency loci could be important not only for rapidly and reversibly generating antigenic variation to escape immune responses but that they may also mediate the evolution of host specificity.

Indexed as

BartonellaBartonella InfectionsHost SpecificityMicrosatellite RepeatsAdaptation, PhysiologicalAnimalsEvolution, MolecularGerbillinaeIsrael

Identifiers

PMID39348417
PMCPMC11466379

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.