Evidence map›Paper›PMID 39345598›Full record

ArticlebioRxiv : the preprint server for biology2025

Prediction and functional interpretation of inter-chromosomal genome architecture from DNA sequence with TwinC.

Anupama Jha, Borislav Hristov, Xiao Wang, Sheng Wang, William J Greenleaf, Anshul Kundaje, Erez Lieberman Aiden, Alessandro Bertero, William Stafford Noble

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Anupama JhaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0003-3029-2086
Borislav HristovDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Xiao WangDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Sheng WangPaul G. Allen Center for Computer Science & Engineering, University of Washington, Seattle, WA, USA.
William J GreenleafDepartment of Genetics, Stanford University, Stanford, CA, USA.
Anshul KundajeDepartment of Genetics, Stanford University, Stanford, CA, USA.
Erez Lieberman AidenThe Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA.
Alessandro BerteroMolecular Biotechnology Center "Guido Tarone," Department of Molecular Biotechnology and Health Sciences, University of Turin, Torino, Italy.ORCID 0000-0002-4919-9087
William Stafford NobleDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7283-4715

Funding

Deep tensor genomic imputationR01HG011466 · NHGRI · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD · 2021 to 2024
$1.5M
Integrative models of nuclear DNA organizationK99HG013663 · NHGRI · UNIVERSITY OF WASHINGTON · PI JHA, ANUPAMA · 2024 to 2025
$195k
NHGRI NIH HHS K99 HG013663NHGRI NIH HHS R01 HG011466
6 · The paper itself

Abstract

Three-dimensional nuclear DNA architecture comprises well-studied intra-chromosomal (

Identifiers

PMID39345598
PMCPMC11429679

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.