Evidence map›Paper›PMID 39345563›Full record

ArticlebioRxiv : the preprint server for biology2024

A functional screen for ubiquitin regulation identifies an E3 ligase secreted by

Cameron G Roberts, Supender Kaur, Aaron J Ogden, Michael E Divine, Gus D Warren, Donghoon Kang, Natalia V Kirienko, Paul P Geurink, Monique P C Mulder, Ernesto S Nakayasu and 4 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Cameron G RobertsDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-0115-7013
Supender KaurDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.
Aaron J OgdenBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Michael E DivineDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0003-4659-4089
Gus D WarrenDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-4822-464X
Donghoon KangDepartment of Biosciences, Rice University, Houston, TX 77005, USA.ORCID 0000-0001-5314-0961
Natalia V KirienkoDepartment of Biosciences, Rice University, Houston, TX 77005, USA.ORCID 0000-0002-1537-4967
Paul P GeurinkDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0003-1849-1111
Monique P C MulderDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0001-5386-7132
Ernesto S NakayasuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0000-0002-4056-2695
Jason E McDermottDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0003-2961-2572
Joshua N AdkinsBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.ORCID 0000-0003-0399-0700
Alejandro AballayDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-5975-3352
Jonathan N PrunedaDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.ORCID 0000-0002-0304-4418

Funding

Genetic analysis of innate immunity using C. elegansR37GM070977 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Alejandro Aballay · 2017 to 2026
$3.8M
Exploiting bacterial effector proteins to study human ubiquitin signalingR35GM142486 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Jonathan N Pruneda · 2021 to 2026
$2.6M
Mechanism of innate immune activation by intestinal distensionR01AI156900 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ABALLAY, ALEJANDRO · 2020 to 2024
$2.0M
Molecular mechanisms for clinical dominance of P. aeruginosa ST111 isolatesR21AI176089 · NIAID · RICE UNIVERSITY · PI KIRIENKO, NATASHA · 2024 to 2025
$414k
NIAID NIH HHS R01 AI156900NIAID NIH HHS R21 AI176089NIGMS NIH HHS R35 GM142486NIGMS NIH HHS R37 GM070977
6 · The paper itself

Abstract

Ubiquitin signaling controls many aspects of eukaryotic biology, including targeted protein degradation and immune defense. Remarkably, invading bacterial pathogens have adapted secreted effector proteins that hijack host ubiquitination to gain control over host responses. These ubiquitin-targeted effectors can exhibit, for example, E3 ligase or deubiquitinase activities, often without any sequence or structural homology to eukaryotic ubiquitin regulators. Such convergence in function poses a challenge to the discovery of additional bacterial virulence factors that target ubiquitin. To overcome this, we have developed a workflow to harvest natively secreted bacterial effectors and functionally screen them for ubiquitin regulatory activities. After benchmarking this approach on diverse ligase and deubiquitinase activities from

Indexed as

bacterial effectordeubiquitinasePseudomonas aeruginosaUbiquitinubiquitin ligase

Identifiers

PMID39345563
PMCPMC11430079

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.