Evidence map›Paper›PMID 39345475›Full record

ArticlebioRxiv : the preprint server for biology2024

Diversification and conservation of DNA binding specificities of SPL family of transcription factors.

Miaomiao Li, Tao Yao, Mary Galli, Wanru Lin, Yilin Zhou, Jin-Gui Chen, Andrea Gallavotti, Shao-Shan Carol Huang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Miaomiao LiCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0000-0003-2132-6168
Tao YaoBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0002-9382-0731
Mary GalliWaksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854-8020, USA.ORCID 0000-0001-7413-9409
Wanru LinCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0000-0003-4527-3822
Yilin ZhouCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0009-0008-8810-7211
Jin-Gui ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0002-1752-4201
Andrea GallavottiWaksman Institute of Microbiology, Rutgers University, Piscataway, NJ 08854-8020, USA.ORCID 0000-0002-1901-2971
Shao-Shan Carol HuangCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-7811-0398

Funding

Sequence, chromatin, and cellular contexts of transcription factor- DNA interaction and functionR35GM138143 · NIGMS · NEW YORK UNIVERSITY · PI Shao-shan Carol Huang · 2020 to 2026
$2.4M
NIGMS NIH HHS R35 GM138143
6 · The paper itself

Abstract

SQUAMOSA Promoter-Binding Protein-Like (SPL) transcription factors play vital roles in plant development and stress responses. In this study, we report a comprehensive DNA Affinity Purification sequencing (DAP-seq) analysis for 14 of the 16 SPL transcription factors in

Identifiers

PMID39345475
PMCPMC11429892

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.