Evidence map›Paper›PMID 39344272›Full record

ArticleJournal of chemical information and modeling2024

Influence of Wobbling Tryptophan and Mutations on PET Degradation Explored by QM/MM Free Energy Calculations.

Anna Jäckering, Marc van der Kamp, Birgit Strodel, Kirill Zinovjev

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anna JäckeringInstitute of Theoretical and Computational Chemistry, Heinrich Heine University, Universitätsstr. 1, 40225 Düsseldorf, Germany.ORCID 0000-0003-0031-159X
Marc van der KampSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.ORCID 0000-0002-8060-3359
Birgit StrodelInstitute of Theoretical and Computational Chemistry, Heinrich Heine University, Universitätsstr. 1, 40225 Düsseldorf, Germany.ORCID 0000-0002-8734-7765
Kirill ZinovjevSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.ORCID 0000-0003-1052-5698

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plastic-degrading enzymes, particularly poly(ethylene terephthalate) (PET) hydrolases, have garnered significant attention in recent years as potential eco-friendly solutions for recycling plastic waste. However, understanding of their PET-degrading activity and influencing factors remains incomplete, impeding the development of uniform approaches for enhancing PET hydrolases for industrial applications. A key aspect of PET hydrolase engineering is optimizing the PET-hydrolysis reaction by lowering the associated free energy barrier. However, inconsistent findings have complicated these efforts. Therefore, our goal is to elucidate various aspects of enzymatic PET degradation by means of quantum mechanics/molecular mechanics (QM/MM) reaction simulations and analysis, focusing on the initial reaction step, acylation, in two thermophilic PET hydrolases, LCC and PES-H1, along with their highly active variants, LCC

Indexed as

HydrolasesMolecular Dynamics SimulationMutationPolyethylene TerephthalatesQuantum TheoryThermodynamicsTryptophanModels, MolecularProtein ConformationHydrolasesPolyethylene TerephthalatesTryptophan

Identifiers

PMID39344272
PMCPMC11480989

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.