Evidence map›Paper›PMID 39343732›Full record

ArticlePlant physiology2024

Naringenin chalcone carbon double-bond reductases mediate dihydrochalcone biosynthesis in apple leaves.

Yar-Khing Yauk, Andrew P Dare, Janine M Cooney, Yule Wang, Cyril Hamiaux, Tony K McGhie, Mindy Y Wang, Pengmin Li, Ross G Atkinson

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yar-Khing YaukThe New Zealand Institute for Plant and Food Research Limited (Plant and Food Research), Auckland 1142, New Zealand.
Andrew P DareThe New Zealand Institute for Plant and Food Research Limited (Plant and Food Research), Auckland 1142, New Zealand.
Janine M CooneyPlant and Food Research, Hamilton 3240, New Zealand.ORCID 0000-0002-2547-0100
Yule WangState Key Laboratory for Crop Stress Resistance and High-Efficiency Production/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0000-0001-9932-124X
Cyril HamiauxThe New Zealand Institute for Plant and Food Research Limited (Plant and Food Research), Auckland 1142, New Zealand.ORCID 0000-0001-9198-3441
Tony K McGhiePlant and Food Research, Palmerston North 4442, New Zealand.ORCID 0000-0002-8016-0244
Mindy Y WangThe New Zealand Institute for Plant and Food Research Limited (Plant and Food Research), Auckland 1142, New Zealand.ORCID 0000-0003-2600-2509
Pengmin LiState Key Laboratory for Crop Stress Resistance and High-Efficiency Production/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0000-0003-3514-0153
Ross G AtkinsonThe New Zealand Institute for Plant and Food Research Limited (Plant and Food Research), Auckland 1142, New Zealand.ORCID 0000-0002-7062-6952

Funding

Plant and Food Research's Technology Development programRoyalty Investment Programme and via the Plant and Food Research Blue Skies project P/100111/78
6 · The paper itself

Abstract

Dihydrochalcones (DHCs) are flavonoids produced as a side branch of the phenylpropanoid pathway. DHCs are found at high concentrations in apples (Malus spp.) but not in pears (Pyrus spp.) or other members of the Rosaceae. Biosynthesis of DHCs in apple has been hypothesized to occur via reduction of p-coumaroyl CoA by a Malus × domestica hydroxycinnamoyl CoA double-bond reductase (MdHCDBR) followed by the action chalcone synthase to produce phloretin or via direct reduction of naringenin chalcone to phloretin via an unknown enzyme. In this study, we report that genetic downregulation of MdHCDBR does not reduce DHC concentrations in apple leaves. We used comparative transcriptome analysis to identify candidate naringenin chalcone reductases (NCRs), designated MdNCR1a-c, expressed in apple leaves but not fruit. These MdNCR1 genes form an expanded gene cluster found exclusively in apple. Transient expression of MdNCR1 genes in Nicotiana benthamiana leaves indicated they produced DHCs at high concentrations in planta. Recombinant MdNCR1 utilized naringenin chalcone to produce phloretin at high efficiency. Downregulation of NCR genes in transgenic apple reduced foliar DHC levels by 85% to 95%. Reducing DHC production redirected flux to the production of flavonol glycosides. In situ localization indicated that NCR proteins were likely found in the vacuolar membrane. Active site analysis of AlphaFold models indicated that MdNCR1a-c share identical substrate binding pockets, but the pockets differ substantially in related weakly active/inactive NCR proteins. Identifying the missing enzyme required for DHC production provides opportunities to manipulate DHC content in apple and other fruits and has other applications, e.g. in biofermentation and biopharming.

Indexed as

ChalconesMalusPlant LeavesPlant ProteinsAlcohol OxidoreductasesFlavanonesGene Expression Regulation, PlantNicotianaOxidoreductasesPhloretinPlants, Genetically ModifiedAlcohol Oxidoreductaseschalcone reductaseChalconesdihydrochalconeFlavanonesnaringeninnaringenin chalconeOxidoreductasesPhloretinPlant Proteins

Identifiers

PMID39343732
PMCPMC11638483

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.