Evidence map›Paper›PMID 39343032›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2024

Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.

Wenjuan Ji, Anne Osbourn, Zhenhua Liu

Abstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
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  6. Review
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  10. Review
  11. Article
  12. Australian Rainforests-A Living Museum of Natural Product Chemical Diversity.Progress in the chemistry of organic natural products · 2025
    Review
  13. Article
  14. Article
  15. Current and future perspectives for enhancing our understanding of the evolution of plant metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Wenjuan JiJoint Center for Single Cell Biology; Shanghai Collaborative Innovation Center of Agri-Seeds, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai 200240, People's Republic of China.
Anne OsbournDepartment of Biochemistry and Metabolism, John Innes Centre , Norwich NR4 7UH, UK.ORCID 0000-0003-2195-5810
Zhenhua LiuJoint Center for Single Cell Biology; Shanghai Collaborative Innovation Center of Agri-Seeds, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai 200240, People's Republic of China.ORCID 0000-0002-1786-883X

Funding

Biotechnology and Biological Sciences Research Council 227375/Z/23/ZBurroughs Wellcome Fund 227375/Z/23/ZHigher Education Discipline Innovation ProjectJohn Innes FoundationNational Key Research and Development Program of ChinaNational Natural Science Foundation of China
6 · The paper itself

Abstract

Plants are chemical engineers par excellence. Collectively they make a vast array of structurally diverse specialized metabolites. The raw materials for building new pathways (genes encoding biosynthetic enzymes) are commonly recruited directly or indirectly from primary metabolism. Little is known about how new metabolic pathways and networks evolve in plants, or what key nodes contribute to branches that lead to the biosynthesis of diverse chemicals. Here we review the molecular mechanisms underlying the generation of biosynthetic branchpoints. We also consider examples in which new metabolites are formed through the joining of precursor molecules arising from different biosynthetic routes, a scenario that greatly increases both the diversity and complexity of specialized metabolism. Given the emerging importance of metabolic gene clustering in helping to identify new enzymes and pathways, we further cover the significance of biosynthetic gene clusters in relation to metabolic networks and dedicated biosynthetic pathways. In conclusion, an improved understanding of the branchpoints between metabolic pathways will be key in order to be able to predict and illustrate the complex structure of metabolic networks and to better understand the plasticity of plant metabolism. This article is part of the theme issue 'The evolution of plant metabolism'.

Indexed as

Metabolic Networks and PathwaysPlantsBiological EvolutionBiosynthetic PathwaysEvolution, MolecularMultigene Familybiosynthetic gene clustersbiosynthetic pathway branchpointschemical diversityenzyme promiscuitygene duplicationspecialized metabolism

Identifiers

PMID39343032
PMCPMC11439499

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.