Evidence map›Paper›PMID 39341984›Full record

ArticleAMB Express2024

Metagenomic analyses of a consortium for the bioremediation of hydrocarbons polluted soils.

Emiliana Pandolfo, David Durán-Wendt, Ruben Martínez-Cuesta, Mónica Montoya, Laura Carrera-Ruiz, David Vazquez-Arias, Esther Blanco-Romero, Daniel Garrido-Sanz, Miguel Redondo-Nieto, Marta Martin and 1 more

Abstract read
In one paragraph

Article in AMB Express, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emiliana PandolfoDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
David Durán-WendtDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Ruben Martínez-CuestaDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Mónica MontoyaDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Laura Carrera-RuizDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
David Vazquez-AriasDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Esther Blanco-RomeroDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Daniel Garrido-SanzDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Miguel Redondo-NietoDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Marta MartinDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain.
Rafael RivillaDepartamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Darwin 2, 28049, Madrid, Spain. rafael.rivilla@uam.es.ORCID http://orcid.org/0000-0003-0701-2939

Funding

Horizon 2020 Framework Programme GREENER Grant agreement 826312Ministerio de Ciencia e Innovación TED2021-130996B-I00
6 · The paper itself

Abstract

A bacterial consortium was isolated from a soil in Noblejas (Toledo, Spain) with a long history of mixed hydrocarbons pollution, by enrichment cultivation. Serial cultures of hydrocarbons polluted soil samples were grown in a minimal medium using diesel (1 mL/L) as the sole carbon and energy source. The bacterial composition of the Noblejas Consortium (NC) was determined by sequencing 16S rRNA gene amplicon libraries. The consortium contained around 50 amplicon sequence variants (ASVs) and the major populations belonged to the genera Pseudomonas, Enterobacter, Delftia, Stenotrophomonas, Achromobacter, Acinetobacter, Novosphingobium, Allorhizobium-Neorhizobium-Rhizobium, Ochrobactrum and Luteibacter. All other genera were below 1%. Metagenomic analysis of NC has shown a high abundance of genes encoding enzymes implicated in aliphatic and (poly) aromatic hydrocarbons degradation, and almost all pathways for hydrocarbon degradation are represented. Metagenomic analysis has also allowed the construction of metagenome assembled genomes (MAGs) for the major players of NC. Metatranscriptomic analysis has shown that several of the ASVs are implicated in hydrocarbon degradation, being Pseudomonas, Acinetobacter and Delftia the most active populations.

Indexed as

Bacterial consortiumBioremediationMetagenomicsMetatranscriptomicsTotal petroleum hydrocarbons

Identifiers

PMID39341984
PMCPMC11438761

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.