Evidence map›Paper›PMID 39341207›Full record

ArticleCell reports. Medicine2024

A clinically effective model based on cell-free DNA methylation and low-dose CT for risk stratification of pulmonary nodules.

Wenhua Liang, Jinsheng Tao, Chao Cheng, Haitao Sun, Zhujia Ye, Shuangxiu Wu, Yubiao Guo, Jiaqing Zhang, Qunqing Chen, Dan Liu and 6 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Wenhua LiangDepartment of Thoracic Surgery and Oncology, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou Institute of Respiratory Disease & Health, China State Key Laboratory and National Clinical Research Center for Respiratory Disease, Guangzhou 510120, China. Electronic address: liangwh1987@163.com.
Jinsheng TaoAnchorDx Medical Co., Ltd., Guangzhou 510320, China.
Chao ChengDepartment of Thoracic Surgery, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou 510080, China.
Haitao SunClinical Biobank Center, Guangdong Provincial Clinical Research Center for Laboratory Medicine, Department of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou 510280, China.
Zhujia YeAnchorDx Medical Co., Ltd., Guangzhou 510320, China.
Shuangxiu WuAnchorDx Medical Co., Ltd., Guangzhou 510320, China.
Yubiao GuoDepartment of Pulmonary Medicine, The First Affiliated Hospital of Sun Yat Sen University, Guangzhou 510080, China.
Jiaqing ZhangDepartment of Thoracic Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510280 China.
Qunqing ChenDepartment of Thoracic Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou 510280 China.
Dan LiuDepartment of Respiratory Medicine, West China Hospital of Sichuan University, Chengdu 610041, China.
Lunxu LiuDepartment of Thoracic Surgery, West China Hospital of Sichuan University, Chengdu 610041, China.
Hui TianDepartment of Thoracic Surgery, QILU Hospital, Shandong University, Jinan 250012 China.
Lin TengAnchorDx Medical Co., Ltd., Guangzhou 510320, China.
Nanshan ZhongDepartment of Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou Institute of Respiratory Disease & Health, China State Key Laboratory and National Clinical Research Center for Respiratory Disease, Guangzhou, 510120, China.
Jian-Bing FanAnchorDx Medical Co., Ltd., Guangzhou 510320, China; Department of Pathology, School of Basic Medical Science, Southern Medical University, Guangzhou 518055, China. Electronic address: jianbingfan1115@smu.edu.cn.
Jianxing HeDepartment of Thoracic Surgery and Oncology, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou Institute of Respiratory Disease & Health, China State Key Laboratory and National Clinical Research Center for Respiratory Disease, Guangzhou 510120, China. Electronic address: drjianxing.he@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate, non-invasive, and cost-effective tools are needed to assist pulmonary nodule diagnosis and management due to increasing detection by low-dose computed tomography (LDCT). We perform genome-wide methylation sequencing on malignant and non-malignant lung tissues and designed a panel of 263 differential DNA methylation regions, which is used for targeted methylation sequencing on blood cell-free DNA (cfDNA) in two prospectively collected and retrospectively analyzed multicenter cohorts. We develop and optimize an integrative model for risk stratification of pulmonary nodules based on 40 cfDNA methylation biomarkers, age, and five simple computed tomography (CT) imaging features using machine learning approaches and validate its good performance in two cohorts. Using the two-threshold strategy can effectively reduce unnecessary invasive surgeries, overtreatment costs, and injury for patients with benign nodules while advising immediate treatment for patients with lung cancer, which can potentially improve the overall diagnosis of lung cancer following LDCT/CT screening.

Indexed as

Cell-Free Nucleic AcidsDNA MethylationLung NeoplasmsTomography, X-Ray ComputedAgedBiomarkers, TumorFemaleHumansMachine LearningMaleMiddle AgedMultiple Pulmonary NodulesRetrospective StudiesRisk AssessmentSolitary Pulmonary NoduleBiomarkers, TumorCell-Free Nucleic Acidslow-dose computed tomographymethylation modelplasma cell-free DNApulmonary nodulesrisk stratification

Identifiers

PMID39341207
PMCPMC11513810

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.