Evidence map›Paper›PMID 39340224›Full record

ArticleThe Journal of eukaryotic microbiology

Transcriptomics of Diphyllatea (CRuMs) from South Pacific crater lakes confirm new cryptic clades.

Luis Javier Galindo, Varsha Mathur, Hadleigh Frost, Guifré Torruella, Thomas A Richards, Nicholas A T Irwin

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The Journal of eukaryotic microbiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Luis Javier GalindoDepartment of Biology, University of Oxford, Oxford, UK.ORCID 0000-0003-3642-3200
Varsha MathurDepartment of Biology, University of Oxford, Oxford, UK.ORCID 0000-0002-7695-034X
Hadleigh FrostMerton College, University of Oxford, Oxford, UK.
Guifré TorruellaInstitut de Biologia Evolutiva (CSIC-UPF), Barcelona, Catalonia, Spain.ORCID 0000-0002-6534-4758
Thomas A RichardsDepartment of Biology, University of Oxford, Oxford, UK.ORCID 0000-0002-9692-0973
Nicholas A T IrwinDepartment of Biology, University of Oxford, Oxford, UK.ORCID 0000-0002-2904-8214

Funding

European Molecular Biology Organization ALTF 515-2021H2020 Marie Skłodowska-Curie Actions 101022101Royal Society URF/R/191005
6 · The paper itself

Abstract

The Diphyllatea (CRuMs) are heterotrophic protists currently divided into three distinct clades (Diphy I-III). Diphy I are biflagellates in the genus Diphylleia, whereas Diphy II and III represent cryptic clades comprising Collodictyon-type quadriflagellates that were recently distinguished based on rRNA gene phylogenies. Here, we isolated Diphyllatea from freshwater crater lakes on two South Pacific islands and generated high-quality transcriptomes from species representing each clade, including the first transcriptomic data from Diphy III. Phylogenomic analyses support the separation of Diphy II and III, while transcriptome completeness highlights the utility of these data for future studies. Lastly, we discuss the biogeography and ecology of Diphyllatea on these remote islands.

Indexed as

LakesPhylogenyTranscriptomePacific IslandsbiogeographyCollodictyoncrater lakesDiphyllateaphylogenomicssingle‐celltranscriptomics

Identifiers

PMID39340224
PMCPMC11603278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.