Evidence map›Paper›PMID 39337286›Full record

ArticleInternational journal of molecular sciences2024

A Spatiotemporal Transcriptome Reveals Stalk Development in Pearl Millet.

Fei Mao, Lin Luo, Nana Ma, Qi Qu, Hao Chen, Chao Yi, Mengxue Cao, Ensi Shao, Hui Lin, Zhanxi Lin and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. aBIOTECH · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Fei MaoNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Lin LuoNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0000-0002-1050-1293
Nana MaCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Qi QuNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0009-0007-3887-2129
Hao ChenNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Chao YiNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Mengxue CaoNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Ensi ShaoNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0000-0001-9825-0857
Hui LinNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Zhanxi LinNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Fangjie ZhuNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0000-0002-0143-5765
Guodong LuKey Laboratory of Bio-Pesticides and Chemical Biology, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou 350002, China.ORCID 0000-0001-6325-9165
Dongmei LinNational Engineering Research Center of JUNCAO, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology and College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Funding

Major Special Project of Fujian, Natural Science Foundation of Fujian, National Natural Science Foundation of China and 2020 Award Program for Min River Scholar in Fujian 2021NZ029009, 2022J06017, 32170554, 32370582
6 · The paper itself

Abstract

Pearl millet is a major cereal crop that feeds more than 90 million people worldwide in arid and semi-arid regions. The stalk phenotypes of Poaceous grasses are critical for their productivity and stress tolerance; however, the molecular mechanisms governing stalk development in pearl millet remain to be deciphered. In this study, we spatiotemporally measured 19 transcriptomes for stalk internodes of four different early developmental stages. Data analysis of the transcriptomes defined four developmental zones on the stalks and identified 12 specific gene sets with specific expression patterns across the zones. Using weighted gene co-expression network analysis (WGCNA), we found that two co-expression modules together with candidate genes were involved in stalk elongation and the thickening of pearl millet. Among the elongation-related candidate genes, we established by SELEX that a MYB-family transcription factor PMF7G02448 can bind to the promoters of three cell wall synthases genes (

Indexed as

Gene Expression Regulation, PlantPennisetumPlant ProteinsTranscriptomeGene Expression ProfilingGene Regulatory NetworksPromoter Regions, GeneticTranscription FactorsPlant ProteinsTranscription Factorsgene expressiongenetic improvementpearl milletstalk developmenttranscriptome analysis

Identifiers

PMID39337286
PMCPMC11432187

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.