Evidence map›Paper›PMID 39333630›Full record

ArticleScientific reports2024

Length-scale study in deep learning prediction for non-small cell lung cancer brain metastasis.

Haowen Zhou, Siyu Lin, Mark Watson, Cory T Bernadt, Oumeng Zhang, Ling Liao, Ramaswamy Govindan, Richard J Cote, Changhuei Yang

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haowen Zhou *Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
Siyu Lin *Department of Electrical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
Mark WatsonDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Cory T BernadtDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Oumeng ZhangDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
Ling LiaoDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Ramaswamy GovindanDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Richard J CoteDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Changhuei YangDepartment of Electrical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA. chyang@caltech.edu.

Funding

A comprehensive liquid biopsy platform for detection and prognostication in early stage breast cancerU01CA233363 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI AGARWAL, ASHUTOSH, COTE, RICHARD JAMES · 2018 to 2022
$2.6M
Heritage Research Institute for the Advancement of Medicine and Science at Caltech HMRI-15-09-01NCI NIH HHS U01CA233363Sensing to Intelligence (S2I) 13520296
6 · The paper itself

Abstract

Deep learning-assisted digital pathology has demonstrated the potential to profoundly impact clinical practice, even surpassing human pathologists in performance. However, as deep neural network (DNN) architectures grow in size and complexity, their explainability decreases, posing challenges in interpreting pathology features for broader clinical insights into physiological diseases. To better assess the interpretability of digital microscopic images and guide future microscopic system design, we developed a novel method to study the predictive feature length-scale that underpins a DNN's predictive power. We applied this method to analyze a DNN's capability in predicting brain metastasis from early-stage non-small-cell lung cancer biopsy slides. This study quantifies DNN's attention for brain metastasis prediction, targeting features at both the cellular scale and tissue scale in H&E-stained histological whole slide images. At the cellular scale, the predictive power of DNNs progressively increases with higher resolution and significantly decreases when the resolvable feature length exceeds 5 microns. Additionally, DNN uses more macro-scale features associated with tissue architecture and is optimized when assessing visual fields greater than 41 microns. Our study computes the length-scale requirements for optimal DNN learning on digital whole-slide microscopic images, holding the promise to guide future optical microscope designs in pathology applications and facilitating downstream deep learning analysis.

Indexed as

Brain NeoplasmsCarcinoma, Non-Small-Cell LungDeep LearningLung NeoplasmsHumansImage Processing, Computer-AssistedNeural Networks, Computer

Identifiers

PMID39333630
PMCPMC11436900

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.