Evidence map›Paper›PMID 39333573›Full record

ArticleScientific reports2024

Identification of potential new T cell activation molecules: a Bioinformatic Approach.

Mario Morales-Martínez, David Andón-García, Karla Aimee Patiño-Santiago, Jesús Miguel Parga-Ortega, Abrahan Hernández-Hernández, Guillermo Aquino-Jarquin, Genaro Patino-Lopez

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mario Morales-MartínezImmunology and Proteomics Laboratory, Children's Hospital of Mexico, Mexico City, 06720, Mexico.
David Andón-GarcíaImmunology and Proteomics Laboratory, Children's Hospital of Mexico, Mexico City, 06720, Mexico.
Karla Aimee Patiño-SantiagoImmunology and Proteomics Laboratory, Children's Hospital of Mexico, Mexico City, 06720, Mexico.
Jesús Miguel Parga-OrtegaImmunology and Proteomics Laboratory, Children's Hospital of Mexico, Mexico City, 06720, Mexico.
Abrahan Hernández-HernándezDepartment of Cell and Molecular Biology, Karolinska Institute, Stockholm, 17177, Sweden.
Guillermo Aquino-JarquinRNA Biology and Genome Editing Section, Genomics, Genetics, and Bioinformatics Research Laboratory, 'Federico Gómez' Children's Hospital of Mexico, Mexico City, 06720, Mexico.
Genaro Patino-LopezImmunology and Proteomics Laboratory, Children's Hospital of Mexico, Mexico City, 06720, Mexico. gpatino@himfg.edu.mx.

Funding

CONAHCYT 320456Hospital Infantil de México Federico Gómez HIM/2022/015
6 · The paper itself

Abstract

T-cell activation is central for the initiation of T cell mediated adaptive immune response and is the result of the close communication between the Antigen Presenting Cell (APC) and the T lymphocyte. Although T-cell activation is currently well understood, and many intracellular pathways are well characterized, nevertheless new players are constantly identified, and this complements the known protein interactome. In this work we aimed to identify new proteins involved in T cell activation. We reviewed and analyzed results of microarray gene expression datasets reported in the public database GEO-NCBI. Using data from GSE136625, GSE50971, GSE13887, GSE11989 and GSE902 we performed different comparisons using R and other bioinformatic tools including GEO2R and we report here upregulated genes that have no previous reports in immune related functions and with potential participation upon T-cell activation. Our results indicate that RND3, SYT10, IgSF6 and PIN1 are potential new T-cell activation molecules.

Indexed as

Computational BiologyLymphocyte ActivationT-LymphocytesGene Expression ProfilingHumansEffector functionsImmune ResponseLymphocytesSignaling ProteinsT-cell activation

Identifiers

PMID39333573
PMCPMC11436975

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.