Evidence map›Paper›PMID 39333521›Full record

ArticleNature communications2024

Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli.

Zhi-Qiang Xu, Slobodan Jergic, Allen T Y Lo, Alok C Pradhan, Simon H J Brown, James C Bouwer, Harshad Ghodke, Peter J Lewis, Gökhan Tolun, Aaron J Oakley and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Mechanistic diversity of clamp loading at small DNA gaps.The Journal of biological chemistry · 2026
    Review
  2. Article
  3. Article
  4. Phage Mu enlists the β-sliding clamp for late gene transcription.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. ThebioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Differences in clamp loader mechanism between bacteria and eukaryotes.bioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhi-Qiang XuMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia. zhiqiang@uow.edu.au.ORCID 0000-0002-5884-0569
Slobodan JergicMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.
Allen T Y LoMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.
Alok C PradhanMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0009-0001-6742-2676
Simon H J BrownMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0003-3997-4614
James C BouwerMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0003-2384-070X
Harshad GhodkeMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.
Peter J LewisMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.
Gökhan TolunMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.
Aaron J OakleyMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia.ORCID 0000-0002-4764-014X
Nicholas E DixonMolecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, Australia. nickd@uow.edu.au.ORCID 0000-0002-5958-6945

Funding

Department of Education and Training | Australian Research Council (ARC) DP180100805Department of Education and Training | Australian Research Council (ARC) DP210100365
6 · The paper itself

Abstract

Ring-shaped DNA sliding clamps are essential for DNA replication and genome maintenance. Clamps need to be opened and chaperoned onto DNA by clamp loader complexes (CLCs). Detailed understanding of the mechanisms by which CLCs open and place clamps around DNA remains incomplete. Here, we present a series of six structures of the Escherichia coli CLC bound to an open or closed clamp prior to and after binding to a primer-template DNA, representing the most significant intermediates in the clamp loading process. We show that the ATP-bound CLC first binds to a clamp, then constricts to hold onto it. The CLC then expands to open the clamp with a gap large enough for double-stranded DNA to enter. Upon binding to DNA, the CLC constricts slightly, allowing clamp closing around DNA. These structures provide critical high-resolution snapshots of clamp loading by the E. coli CLC, revealing how the molecular machine works.

Indexed as

DNA, BacterialEscherichia coliEscherichia coli ProteinsAdenosine TriphosphateCryoelectron MicroscopyDNA Polymerase IIIDNA ReplicationModels, MolecularAdenosine TriphosphateDNA, BacterialDNA Polymerase IIIEscherichia coli Proteins

Identifiers

PMID39333521
PMCPMC11436948

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.