Evidence map›Paper›PMID 39333394›Full record

ArticleNature ecology & evolution2024

Genomic and fitness consequences of a near-extinction event in the northern elephant seal.

Joseph I Hoffman, David L J Vendrami, Kosmas Hench, Rebecca S Chen, Martin A Stoffel, Marty Kardos, William Amos, Jörn Kalinowski, Daniel Rickert, Karl Köhrer and 5 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  7. A fixed mutation in the respiratory complex I impairs mitochondrial bioenergetics in the endangered Apennine brown bear.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
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  10. Article
  11. Article
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  13. Reference genome of the leopard seal (Frontiers in genetics · 2025
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Joseph I HoffmanDepartment of Evolutionary Population Genetics, Faculty of Biology, Bielefeld University, Bielefeld, Germany. joseph.hoffman@uni-bielefeld.de.ORCID http://orcid.org/0000-0001-5895-8949
David L J VendramiDepartment of Evolutionary Population Genetics, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
Kosmas HenchDepartment of Evolutionary Population Genetics, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
Rebecca S ChenDepartment of Evolutionary Population Genetics, Faculty of Biology, Bielefeld University, Bielefeld, Germany.ORCID http://orcid.org/0000-0002-9364-3771
Martin A StoffelDepartment of Evolutionary Population Genetics, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
Marty KardosNorthwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-7587-3004
William AmosDepartment of Zoology, University of Cambridge, Cambridge, UK.
Jörn KalinowskiDepartment of Microbial Genomics and Biotechnology, CeBiTec, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
Daniel RickertGenomics and Transcriptomics Laboratory, Biologisch-Medizinisches Forschungszentrum, and West German Genome Center, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
Karl KöhrerGenomics and Transcriptomics Laboratory, Biologisch-Medizinisches Forschungszentrum, and West German Genome Center, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
Thorsten WachtmeisterGenomics and Transcriptomics Laboratory, Biologisch-Medizinisches Forschungszentrum, and West German Genome Center, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.ORCID http://orcid.org/0000-0002-6760-2458
Mike E GoebelInstitute of Marine Sciences, University of California, Santa Cruz, Santa Cruz, CA, USA.
Carolina A BoninDepartment of Marine and Environmental Sciences, Hampton University, Hampton, VA, USA.
Frances M D GullandKaren C. Drayer Wildlife Health Center, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0002-6416-0156
Kanchon K DasmahapatraDepartment of Biology, University of York, York, UK.ORCID http://orcid.org/0000-0002-2840-7019

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the genetic and fitness consequences of anthropogenic bottlenecks is crucial for biodiversity conservation. However, studies of bottlenecked populations combining genomic approaches with fitness data are rare. Theory predicts that severe bottlenecks deplete genetic diversity, exacerbate inbreeding depression and decrease population viability. However, actual outcomes are complex and depend on how a species' unique demography affects its genetic load. We used population genetic and veterinary pathology data, demographic modelling, whole-genome resequencing and forward genetic simulations to investigate the genomic and fitness consequences of a near-extinction event in the northern elephant seal. We found no evidence of inbreeding depression within the contemporary population for key fitness components, including body mass, blubber thickness and susceptibility to parasites and disease. However, we detected a genomic signature of a recent extreme bottleneck (effective population size = 6; 95% confidence interval = 5.0-7.5) that will have purged much of the genetic load, potentially leading to the lack of observed inbreeding depression in our study. Our results further suggest that deleterious genetic variation strongly impacted the post-bottleneck population dynamics of the northern elephant seal. Our study provides comprehensive empirical insights into the intricate dynamics underlying species-specific responses to anthropogenic bottlenecks.

Indexed as

Genetic FitnessSeals, EarlessAnimalsExtinction, BiologicalGenetic VariationPopulation Dynamics

Identifiers

PMID39333394
PMCPMC11618080

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.