Evidence map›Paper›PMID 39333367›Full record

ArticleScientific reports2024

Identification of immune patterns in idiopathic pulmonary fibrosis patients driven by PLA2G7-positive macrophages using an integrated machine learning survival framework.

Tianxi Liu, Jingyuan Ning, Xiaoqing Fan, Huan Wei, Guangsen Shi, Qingshan Bill Fu

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tianxi Liu *School of Pharmaceutical Sciences, Southern Medical University, Guangzhou, Guangdong, People's Republic of China.
Jingyuan Ning *Department of Immunology, Hebei Medical University, Shijiazhuang, People's Republic of China.
Xiaoqing Fan *Institute of Microbiological Testing and Inspection, Tianjin Centre for Disease Control and Prevention, Tianjin , People's Republic of China.
Huan WeiDepartment of Neurology, The Affiliated Yan'an Hospital of Kunming Medical University, Kunming, People's Republic of China.
Guangsen ShiZhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan, Guangdong, People's Republic of China. shiguangsen@zidd.ac.cn.
Qingshan Bill FuZhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan, Guangdong, People's Republic of China. fuqingshan@simm.ac.cn.

Funding

Creative Research Group of Zhongshan City CXTD2022011National Natural Science Foundation of China 32271320
6 · The paper itself

Abstract

Patients with advanced idiopathic pulmonary fibrosis (IPF), a complex and incurable lung disease with an elusive pathology, are nearly exclusive candidates for lung transplantation. Improved identification of patient subtypes can enhance early diagnosis and intervention, ultimately leading to better prognostic outcomes for patients. The goal of this study is to identify new immune patterns and biomarkers in patients. Immune subtypes in IPF patients were identified using single-sample gene set enrichment analysis, and immune subtype-related genes were explored using the weighted correlation network analysis algorithm. A machine learning integration framework was used to establish the optimal prognostic model, known as the immune-related risk score (IRS). Single-cell sequencing was conducted to investigate the major role of macrophage-derived PLA2G7 in the immune microenvironment. We assessed the stability of celecoxib in targeting PLA2G7 through molecular docking and surface plasmon resonance. IPF patients present two distinct immune subtypes, one characterized by immune activation and inflammation, and the other by immune suppression. IRS can predict the immune status and prognosis of IPF patients. Furthermore, multi-cohort analysis and single-cell sequencing analysis demonstrated the diagnostic and prognostic value of PLA2G7 derived from macrophages and its role in shaping the inflammatory immune microenvironment in IPF patients. Celecoxib could effectively and stably bind with PLA2G7. PLA2G7, as identified through IRS, demonstrates marked stability in diagnosing and predicting the prognosis of IPF patients as well as predicting their immune status. It can serve as a novel biomarker for IPF patients.

Indexed as

Idiopathic Pulmonary FibrosisMachine LearningMacrophagesAgedBiomarkersCelecoxibFemaleHumansMaleMiddle AgedMolecular Docking SimulationPrognosisSingle-Cell AnalysisBiomarkersCelecoxibIdiopathic pulmonary fibrosisMachine learningPLA2G7Single-cell sequencing

Identifiers

PMID39333367
PMCPMC11437001

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.