Evidence map›Paper›PMID 39333353›Full record

ArticleNature plants2024

Retrotransposon-driven environmental regulation of FLC leads to adaptive response to herbicide.

Mathieu Raingeval, Basile Leduque, Pierre Baduel, Alejandro Edera, Fabrice Roux, Vincent Colot, Leandro Quadrana

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  6. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  14. Chromosome-level genome assembly of Pontederia cordata L. provides insights into its rapid adaptation and variation of flower colours.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Mathieu Raingeval *Institute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.ORCID http://orcid.org/0009-0008-6816-3865
Basile Leduque *Institute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.ORCID http://orcid.org/0000-0002-9450-3586
Pierre BaduelInstitut de Biologie de l'Ecole Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, Ecole Normale Supérieure, PSL Research University, Paris, France.ORCID http://orcid.org/0000-0002-9338-2962
Alejandro EderaInstitute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.ORCID http://orcid.org/0000-0001-9864-3159
Fabrice RouxLaboratoire des Interactions Plantes-Microbes-Environnement, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Centre National de la Recherche Scientifique, Université de Toulouse, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-8059-5638
Vincent ColotInstitut de Biologie de l'Ecole Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, Ecole Normale Supérieure, PSL Research University, Paris, France.ORCID http://orcid.org/0000-0002-6382-1610
Leandro QuadranaInstitute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France. leandro.quadrana@cnrs.fr.ORCID http://orcid.org/0000-0001-6279-211X

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-22-CE20-0001Centre National de la Recherche Scientifique (National Center for Scientific Research) MOMENTUMEC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 948674Fondation pour la Recherche Médicale (Foundation for Medical Research in France) NN
6 · The paper itself

Abstract

The mobilization of transposable elements is a potent source of mutations. In plants, several stransposable elements respond to external cues, fuelling the hypothesis that natural transposition can create environmentally sensitive alleles for adaptation. Here we report on the detailed characterization of a retrotransposon insertion within the first intron of the Arabidopsis floral-repressor gene FLOWERING LOCUS C (FLC) and the discovery of its role for adaptation. The insertion mutation augments the environmental sensitivity of FLC by affecting the balance between coding and non-coding transcripts in response to stress, thus expediting flowering. This balance is modulated by DNA methylation and orchestrated by IBM2, a factor involved in the processing of intronic heterochromatic sequences. The stress-sensitive allele of FLC has spread across populations subjected to recurrent chemical weeding, and we show that retrotransposon-driven acceleration of the life cycle represents a rapid response to herbicide application. Our work provides a compelling example of a transposable element-driven environmentally sensitive allele that confers an adaptive response in nature.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHerbicidesRetroelementsAdaptation, PhysiologicalAllelesDNA MethylationFlowersMADS Domain ProteinsArabidopsis ProteinsAt5g10140 protein, ArabidopsisHerbicidesMADS Domain ProteinsRetroelements

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.